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OBOFoundry / OBO-Dashboard

Summary Dashboard for Open Biological and Biomedical Ontologies
http://dashboard.obofoundry.org/
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prefix_unknown should cause warning #79

Open cthoyt opened 2 years ago

cthoyt commented 2 years ago

gombo (https://obofoundry.github.io/obo-nor.github.io/dashboard/gombo/dashboard.html) and epso (https://obofoundry.github.io/obo-nor.github.io/dashboard/epso/dashboard.html) both contain in the Info: Usage of namespaces in axioms section the following prefix: prefix_unknown: ....

This seems like an issue with the integrity of the ontology, and should get a warning

matentzn commented 2 years ago

I think this is because the prefix map we are using in the dashboard is extremely limited - (not the one from bioregistry - deliberately only the one shipped with ROBOT, which is basically the obofoundry context). So its not really an error to worry about I think.

cthoyt commented 2 years ago

So it's unable to report back what they are? Maybe it could give some examples since this is more likely the place where garbage could creep in

matentzn commented 2 years ago

https://github.com/ontodev/robot/issues/908