search

OBOFoundry / OBOFoundry.github.io

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
http://obofoundry.org
Other
161 stars 201 forks source link

Ensure migration from google code and encourage migration from sourceforge #76

Closed cmungall closed 5 years ago

cmungall commented 9 years ago 
$ grep code.goog ontology/*md
$ grep sourceforg ontology/*md

Some may be from obsolete ontologies, but even so best to have these migrated for posterity

mcourtot commented 7 years ago

does anything remain to be done on this?

cmungall commented 7 years ago 
$ grep code.goog ontology/*md
ontology/cmf.md:homepage: https://code.google.com/p/craniomaxillofacial-ontology/
ontology/cvdo.md:homepage: https://code.google.com/p/cvdo/
ontology/cvdo.md:tracker: https://code.google.com/p/cvdo/issues/list
ontology/epo.md:homepage: https://code.google.com/p/epidemiology-ontology/
ontology/geo.md:homepage: https://code.google.com/p/ge-ontology/
ontology/ido.md:tracker: http://code.google.com/p/infectious-disease-ontology/issues/list
ontology/mirnao.md:homepage: http://code.google.com/p/mirna-ontology/
ontology/ogg.md:tracker: https://code.google.com/p/ogg/issues/list
ontology/ogi.md:homepage: https://code.google.com/p/ontology-for-genetic-interval/
ontology/ogi.md:tracker: https://code.google.com/p/ontology-for-genetic-interval/issues/list
ontology/ogms.md:homepage: http://code.google.com/p/ogms/
ontology/ogms.md:page: http://code.google.com/p/ogms/
ontology/ogsf.md:homepage: https://code.google.com/p/ogsf/
ontology/ogsf.md:tracker: https://code.google.com/p/ogsf/issues/list
ontology/omrse.md:page: http://code.google.com/p/omrse/
$ grep sourceforg ontology/*md
ontology/caro.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/caro/caro.obo
ontology/cdao.md:homepage: http://sourceforge.net/apps/mediawiki/cdao/index.php?title=Main_Page
ontology/cl.md:mailing_list: https://lists.sourceforge.net/lists/listinfo/obo-cell-type
ontology/ddanat.md:tracker: http://sourceforge.net/tracker/?group_id=76834&atid=974664
ontology/doid.md:DO wiki: http://diseaseontology.sourceforge.net/
ontology/fbsp.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo
ontology/fma.md:tracker: https://sourceforge.net/p/obo/foundational-model-of-anatomy-fma-requests/
ontology/fypo.md:  source_url: https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo.obo?format=raw
ontology/mamo.md:homepage: http://sourceforge.net/p/mamo-ontology/wiki/Home/
ontology/mamo.md:tracker: http://sourceforge.net/p/mamo-ontology/tickets/
ontology/mo.md:homepage: http://mged.sourceforge.net/ontologies/MGEDontology.php
ontology/mo.md:page: http://mged.sourceforge.net/software/downloads.php
ontology/ms.md:mailing_list: psidev-ms-vocab@lists.sourceforge.net
ontology/ms.md: * https://lists.sourceforge.net/lists/listinfo/psidev-ms-vocab
ontology/ncbitaxon.md:  email: obo-taxonomy@lists.sourceforge.net
ontology/ncbitaxon.md: * https://lists.sourceforge.net/lists/listinfo/obo-taxonomy
ontology/nmr.md:homepage: http://msi-ontology.sourceforge.net/
ontology/nmr.md:page: http://msi-ontology.sourceforge.net/ontology/NMR.owlDocument.doc
ontology/nmr.md:  source_url: https://msi-workgroups.svn.sourceforge.net/svnroot/msi-workgroups/ontology/NMR.owl
ontology/pr.md:tracker: http://sourceforge.net/tracker/?group_id=266825&atid=1135711
ontology/rex.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/physicochemical/rex.obo
ontology/ro.md:mailing_list: https://lists.sourceforge.net/lists/listinfo/obo-relations
ontology/sbo.md:tracker: https://sourceforge.net/p/sbo/term-request/
ontology/sep.md:  email: psidev-gps-dev@lists.sourceforge.net
ontology/so.md:  email: song-devel@lists.sourceforge.net
ontology/spd.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/spider/spider_comparative_biology.obo
ontology/spd.md:tracker: http://sourceforge.net/tracker/?group_id=76834&atid=977401
ontology/swo.md:  source_url: http://theswo.svn.sourceforge.net/viewvc/theswo/trunk/src/release/swoinowl/swo_merged/swo_merged.owl
ontology/symp.md:  source_url: https://sourceforge.net/p/diseaseontology/code/HEAD/tree/Symptom_Ontology/symptom_ontology.obo
ontology/symp.md:tracker: http://sourceforge.net/tracker/?func=add&group_id=79168&atid=555739
ontology/trans.md:homepage: http://diseaseontology.sourceforge.net/
ontology/trans.md:  source_url: https://sourceforge.net/p/diseaseontology/code/HEAD/tree/Transmission_Process_Ontology/transmission_process_ontology.obo
ontology/trans.md:tracker: http://sourceforge.net/tracker/?func=add&group_id=79168&atid=555739
ontology/tto.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/teleost_taxonomy.obo
ontology/tto.md:tracker: http://sourceforge.net/tracker/?group_id=76834&atid=1046550
ontology/uberon.md:mailing_list: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
ontology/vo.md:tracker: http://sourceforge.net/tracker/?atid=1127137&group_id=255029&func=browse
ontology/vsao.md:  source_url: http://phenoscape.svn.sourceforge.net/svnroot/phenoscape/tags/vocab-releases/VSAO/vsao.obo
lschriml commented 6 years ago

Chris -- has this been completed ?

rvita commented 6 years ago

updated homepages for several ontologies as part of metadata updates. this resulted in geo, omrse, hom, & mfmo being changed to github pages. Will continue to check for & change homepages from google code as remainder of ontologies are verified for metadata.