OBOFoundry / Operations-Committee-RETIRED

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Update Richard Scheuermann's info on OBO Foundry coordination page #111

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
to obo-admin Sept 18, no response

Please remove BHB from my affiliations and replace with IRD and ViPR, with the 
following descriptions.  Thanks,

Richard

The Influenza Research Database (IRD, http:// www.fludb.org) is a free, open, 
publicly-accessible resource funded by the U.S. National Institute of Allergy 
and Infectious Diseases through the Bioinformatics Resource Centers program. 
IRD provides a comprehensive, integrated database and analysis resource for 
influenza sequence, surveillance, and research data, including user-friendly 
interfaces for data retrieval, visualization and comparative genomics analysis, 
together with personal log in- protected ‘workbench’ spaces for saving data 
sets and analysis results. IRD integrates genomic, proteomic, immune epitope, 
and surveillance data from a variety of sources, including public databases, 
computational algorithms, external research groups, and the scientific 
literature.

The Virus Pathogen Database and Analysis Resource (ViPR, www.ViPRbrc.org) is an 
integrated repository of data and analysis tools for multiple virus families, 
supported by the National Institute of Allergy and Infectious Diseases (NIAID) 
Bioinformatics Resource Centers (BRC) program. ViPR contains information for 
human pathogenic viruses belonging to the Arenaviridae, Bunyaviridae, 
Caliciviridae, Coronaviridae, Flaviviridae, Filoviridae, Hepeviridae, 
Herpesviridae, Paramyxoviridae, Picornaviridae, Poxviridae, Reoviridae, 
Rhabdoviridae and Togaviridae families, with plans to support additional virus 
families in the future. ViPR captures various types of information, including 
sequence records, gene and protein annotations, 3D protein structures, immune 
epitope locations, clinical and surveillance metadata and novel data derived 
from comparative genomics analysis. Analytical and visualization tools for 
metadata- driven statistical sequence analysis, multiple sequence alignment, 
phylogenetic tree construction, BLAST comparison and sequence variation 
determination are also provided. Data filtering and analysis workflows can be 
combined and the results saved in personal ‘Workbenches’ for future use. 
ViPR tools and data are available without charge as a service to the virology 
research community to help facilitate the development of diagnostics, 
prophylactics and therapeutics for priority pathogens and other viruses.
--------------------------------------------
Richard H. Scheuermann, Ph.D.
Director of Informatics
J. Craig Venter Institute
10355 Science Center Dr.
San Diego, CA 92121

Sent to obo-admin and obo-foundry-operations-committee@googlecode.com Oct 7. 
Looks like the second address is a typo. Nobody responded. 

Also, please change my personal link to 
http://www.jcvi.org/cms/about/bios/rscheuermann/ .  Thanks,

Richard

Needs to be updated on OBO CVS obo-website/obo/website/htdocs/coordination.shtml

Original issue reported on code.google.com by alanruttenberg@gmail.com on 10 Oct 2013 at 3:14

GoogleCodeExporter commented 9 years ago
Done. Should show up tomorrow.
Need to check with Richard whether he still wants the Immport affiliation. 
Added that to Barry and I.

Original comment by alanruttenberg@gmail.com on 10 Oct 2013 at 3:32

GoogleCodeExporter commented 9 years ago
If that's the page in question, http://www.obofoundry.org/coordination.shtml, 
it doesn't seem to have worked.

Original comment by mcour...@gmail.com on 10 Oct 2013 at 10:45

GoogleCodeExporter commented 9 years ago
Live now. Closing ticke

Original comment by alanruttenberg@gmail.com on 11 Oct 2013 at 9:50

GoogleCodeExporter commented 9 years ago
Alan, it looks like there is a leading space (%20) in front of the IRD 
hyperlink and so the home page doesn't resolve

Original comment by rscheuer...@jcvi.org on 14 Oct 2013 at 6:42

GoogleCodeExporter commented 9 years ago
Fixed in the source. Sigh

Original comment by alanruttenberg@gmail.com on 14 Oct 2013 at 8:47

GoogleCodeExporter commented 9 years ago
Looks all done. Closing.

Original comment by mcour...@gmail.com on 16 Oct 2013 at 4:10