OBOFoundry / purl.obolibrary.org

A system for managing OBO PURLs
BSD 3-Clause "New" or "Revised" License
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obo/SYMP does not resolve #838

Closed psiotwo closed 2 years ago

psiotwo commented 2 years ago

Getting 404 for http://purl.obolibrary.org/obo/symp.owl

jamesaoverton commented 2 years ago

The files were moved in this commit: https://github.com/DiseaseOntology/SymptomOntology/commit/d5c992c9acf305743cb2dd96a5f07e76adae81cb

tgbugs commented 2 years ago

I'm still seeing issues with http://purl.obolibrary.org/obo/symp/releases/2022-04-05/symp.owl. It isn't 404ing perse, but for the past two weeks I have been hitting the REDUCED_REDUNDANCY page on http://ontologies.berkeleybop.org/ following redirects through

http://purl.oclc.org/obo/symp/releases/2022-04-05/symp.owl
https://purl.oclc.org/obo/symp/releases/2022-04-05/symp.owl and
http://www.berkeleybop.org/ontologies/symp/releases/2022-04-05/symp.owl
which unfortunately seems to redirect to http://ontologies.berkeleybop.org.

This will break any scigraph load that imports the disease ontology.

matentzn commented 2 years ago

@tgbugs symp does not have version IRIs configured:

https://github.com/OBOFoundry/purl.obolibrary.org/blob/master/config/symp.yml

I think this should be done, but you need to lobby the SYMP developers to do github releases, in order to create the tags required to set up a version IRI redirect config:

https://github.com/OBOFoundry/purl.obolibrary.org/blob/master/config/aism.yml#L17

In any case, this needs a new issue, but IMO it should be on the SYMP issue tracker.

tgbugs commented 2 years ago

@matentzn good to know. I'll also hunt down how that version iri made it into the import chain as well since there is basically no way it could possibly resolve.