OBON-UN-Ocean-Decade / odis-interface

This repository contains both guidance and mechanisms to connect the holdings of the OBON partnership to the IOC-UNESCO IODE Ocean Data and Information System (ODIS)
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Ensure all OBON Dataset patterns have distribution values #2

Open pbuttigieg opened 11 months ago

pbuttigieg commented 11 months ago

...to get directly to data downloads in various formats

pbuttigieg commented 11 months ago

For example, this IMOS record only has a URL (and also thinks organisations are people)

image

{
  "@context": {
    "@vocab": "https://schema.org/"
  },
  "@type": "Dataset",
  "creator": [
    {
      "@type": "Role",
      "roleName": "Principal investigator",
      "creator": {
        "@type": "Person",
        "name": "Van de Kamp, Jodie",
        "url": "https://researchdata.edu.au/van-kamp-jodie/1911972"
      }
    },
    {
      "@type": "Role",
      "roleName": "Principal investigator",
      "creator": {
        "@type": "Person",
        "name": "Van de Kamp, Jodie",
        "url": "https://researchdata.edu.au/van-kamp-jodie/1883652"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "Bioplatforms Australia"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "Integrated Marine Observing System (IMOS)"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "Commonwealth Scientific and Industrial Research Organisation (CSIRO)"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "Parks Australia"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "Environment Protection Authority Victoria (EPA), Victorian Government"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "Deakin University"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "University of Technology, Sydney (UTS)"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "The University of New South Wales (UNSW)"
      }
    },
    {
      "@type": "Role",
      "roleName": "Contributor",
      "creator": {
        "@type": "Person",
        "name": "Australian Institute of Marine Science (AIMS)"
      }
    }
  ],
  "datePublished": "2019",
  "sourceOrganization": {
    "@type": "Organization",
    "name": "Australian Ocean Data Network"
  },
  "keywords": [
    "oceans",
    "biota",
    "Oceans | Marine Biology | Marine Microbiota",
    "ZOOPLANKTON",
    "EARTH SCIENCE",
    "BIOSPHERE",
    "AQUATIC ECOSYSTEMS",
    "PLANKTON",
    "MICROALGAE",
    "BIOLOGICAL CLASSIFICATION",
    "PLANTS",
    "PHYTOPLANKTON",
    "PROTISTS",
    "PLANKTON",
    "Global / Oceans | Indian Ocean",
    "Marine Features (Australia) | Bass Strait, TAS/VIC",
    "Global / Oceans | Pacific Ocean",
    "Regional Seas | Tasman Sea",
    "Regional Seas | Timor Sea",
    "Regional Seas | Coral Sea",
    "Marine Features (Australia) | Great Australian Bight, SA/WA",
    "Countries | Australia",
    "States, Territories (Australia) | Western Australia",
    "States, Territories (Australia) | Queensland",
    "States, Territories (Australia) | Tasmania",
    "States, Territories (Australia) | Victoria",
    "States, Territories (Australia) | New South Wales",
    "States, Territories (Australia) | South Australia",
    "Marine Features (Australia) | Kangaroo Island, SA",
    "Marine Features (Australia) | Maria Island, TAS",
    "States, Territories (Australia) | Northern Territory",
    "Marine Features (Australia) | Port Hacking, NSW",
    "Marine Features (Australia) | North Stradbroke Island, QLD",
    "Coastal Cities / Towns (Australia) | Darwin, NT",
    "Coastal Cities / Towns (Australia) | Esperance, WA",
    "Marine Features (Australia) | Ningaloo Marine Park, WA",
    "Marine Features (Australia) | Rottnest Island, WA",
    "Marine Microbiome Initiative Facility, Integrated Marine Observing System (IMOS)"
  ],
  "license": [
    "CC-BY",
    "http://creativecommons.org/licenses/by/4.0/",
    "Creative Commons Attribution 4.0 International License",
    "CC-BY",
    "http://creativecommons.org/licenses/by/4.0"
  ],
  "publisher": {
    "@type": "Organization",
    "name": ""
  },
  "spatialCoverage": [
    {
      "@type": "Place",
      "geo": {
        "@type": "GeoShape",
        "box": "-44 112 -9 154"
      }
    },
    {
      "@type": "Place",
      "description": "text westlimit=112.00; southlimit=-44.00; eastlimit=154.00; northlimit=-9.00"
    }
  ],
  "inLanguage": "en",
  "name": "IMOS - Marine Microbiome Initiative Facility",
  "description": [
    "Marine microorganisms control the productivity and biogeochemistry of the global ocean. In light of this fundamental importance the Global Ocean Observing System (GOOS) has designated microbial biomass and diversity as emerging essential ocean variables (EOV) and a necessary component of an integrated and sustained ocean observing system. The IMOS Marine Microbiome Initiative Facility facilitates the delivery of DNA-based data on the distribution, diversity and function of marine microbes in Australian coastal waters and oceans through the collection and processing of water samples from the IMOS National Reference Stations (NRS) and a newly established network of coastal sites. \n\nIMOS NRS are a series of sites designed to monitor oceanographic parameters in Australian coastal ocean waters using moored sensors and water sampling field trips. These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. Water samples are collected monthly from several depths at the 7 current NRS, Maria Island (TAS), Kangaroo Island (SA), Rottnest Island (WA), Darwin (NT), Yongala (QLD), North Stradbroke Island (QLD) and Port Hacking (NSW), establishing a globally unique continental-scale time-series (since 2012 for some NRS) of the marine microbial communities in Australian coastal and shelf waters. \n\nThe IMOS Coastal Sampling sub-Facility is a network of coastal microbial observatories designed to operationally mirror the NRS, but provide novel capacity to understand coastal microbial processes. Coastal environments are highly dynamic due to both natural perturbations and anthropogenic impacts and represent sites where environmental microbial assemblages can have substantial human health and economic impacts. Phase 1 of establishing this network designated three sites of significance based on stakeholder/end user feedback, economic importance, and/or human health and scientific relevance. Sampling sites include coastal waters of the Great Barrier Reef (QLD), Botany Bay (NSW), and Port Phillip Bay (VIC). \n\nData is generated and made available through the Australian Microbiome Initiative, a national bio-resource, providing a searchable database of marine microbial occurrence data. This is an Australian wide collaboration founded on two established Bioplatforms Australia framework data initiatives: Marine Microbes and Biomes of Australian Soil Environments (BASE). The consortium involves researchers from more than 40 institutions supported by the following core partners: Bioplatforms Australia; Integrated Marine Observing System (IMOS); CSIRO and Parks Australia through the Bush Blitz program. The DNA-based data generated by this facility provide crucial spatial and temporal information that underpin the understanding of Australian marine microbiology. Coupled with the suite of biological, physical and chemical observations already established at IMOS National Reference Stations, the Marine Microbiome Initiative supports the understanding of status and trends of oceanic health, biogeochemistry and primary productivity. \n\nThis data is freely available through the Bioplatforms Australia Data Portal (About - The Australian Microbiome Initiative - Organizations - data.bioplatforms.com) including the raw data files as well as processed data products in the form of microbial DNA-sequence based occurrence tables and metagenomics gene maps (gene maps currently in development). Registration is free and required to download data. Please acknowledge all relevant parties, as detailed in acknowledgement section."
  ],
  "identifier": {
    "@type": "PropertyValue",
    "@id": "d014c510-d49c-4e2d-8798-2e6e0e88a705",
    "value": "d014c510-d49c-4e2d-8798-2e6e0e88a705"
  },
  "url": "https://researchdata.edu.au/imos-marine-microbiome-initiative-facility/1911969",
  "prov:wasAttributedTo": {
    "@id": "https://catalogue.odis.org/view/3267",
    "@type": "prov:Organization",
    "rdf:name": "Research Data Australia",
    "rdfs:seeAlso": "https://ardc.edu.au/"
  }
}