ODiogoSilva TriFusion issues

ODiogoSilva / TriFusion

Streamlining phylogenomic data gathering, processing and visualization

http://odiogosilva.github.io/TriFusion/

GNU General Public License v3.0

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issues

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"OperationalError: attempt to write a readonly database" and others

#301 MafaldaSFerreira opened 4 years ago
4
TriFusion in MacOS Mojave

#300 jmbraverman opened 5 years ago
1
Running on Ubuntu 18.04

#299 pbravakos opened 5 years ago
0
Non contiguous partitions

#298 ODiogoSilva closed 6 years ago
1
Convert fasta alignment with headers containing whitespace

#297 DocDer opened 6 years ago
1
Update to 1.0.1

#296 ODiogoSilva closed 6 years ago
1
Added fix to ortholog export issue

#295 ODiogoSilva closed 6 years ago
1
add requirements.txt

#294 cimendes closed 6 years ago
0
Excluding paralogs

#293 jmbraverman closed 6 years ago
3
Replace usearch with diamond in protein search workflows

#292 ODiogoSilva opened 6 years ago
1
Add new orthology operation panel for "Alignment"

#291 ODiogoSilva opened 6 years ago
0
Add option to filter alignments using Guidance as part of the sequence alignments for both protein and nucleotides

#290 ODiogoSilva opened 6 years ago
0
Add workflow with converted nucleotide sequence alignment

#289 ODiogoSilva opened 6 years ago
0
Add workflow for orthology with protein alignments

#288 ODiogoSilva opened 6 years ago
0
Replace usearch dependency.

#287 ODiogoSilva opened 6 years ago
0
Add formatting option for upper case sequence data in TriSeq/TriFusion

#286 ODiogoSilva closed 6 years ago
0
Upper case output sequences

#285 MafaldaSFerreira closed 6 years ago
1
missing -fi in TriSeq [command line version]

#284 MafaldaSFerreira closed 6 years ago
5
1.0.1

#283 ODiogoSilva closed 6 years ago
1
Add version option to CLI interfaces

#282 ODiogoSilva closed 6 years ago
0
error in command line run

#281 dvorikus closed 6 years ago
20
Add option to switch between proportion and counts for gene conservation and characters sliding window plots

#280 ODiogoSilva closed 6 years ago
0
Manual trigger of summary statistics above a threshold of loaded taxa

#279 ODiogoSilva closed 6 years ago
0
Add gene conservation plot

#278 ODiogoSilva closed 6 years ago
0
Add character proportion by gene plot

#277 ODiogoSilva closed 6 years ago
0
Limit taxa button in side panel

#276 ODiogoSilva closed 6 years ago
0
"Wrong" string

#275 StuntsPT opened 7 years ago
0
Better exception handling for process execution.

#274 ODiogoSilva closed 7 years ago
0
Reverse concatenation when providing partition file and single alignment fails silently

#273 ODiogoSilva closed 7 years ago
0
Long delay when importing partition scheme from file

#272 ODiogoSilva closed 7 years ago
0
Add check to TriSeq before overwrite output file with "-o" option

#271 ODiogoSilva opened 7 years ago
0
Mozilla's Global Sprint (June 1st and 2nd 2017)

#270 ODiogoSilva closed 7 years ago
1
Add a Codacy badge to README.md

#269 codacy-badger closed 7 years ago
1
Better docstrings

#268 ODiogoSilva opened 7 years ago
2
Automatic recognition of "?" as missing data

#267 ODiogoSilva closed 7 years ago
0
Click and drag to select plot section

#266 ODiogoSilva opened 7 years ago
0
Create mouseover tooltip framework

#265 ODiogoSilva opened 7 years ago
0
Add invert selection in sidepanel tabs

#264 ODiogoSilva closed 7 years ago
0
Nexus conversion header does not update ntaxa

#263 ODiogoSilva closed 7 years ago
0
Add a Gitter chat badge to README.md

#262 gitter-badger closed 7 years ago
1
Create smooth line plots for single gene plots

#261 ODiogoSilva closed 7 years ago
0
Color legend does not distinguish nucleotides

#260 ODiogoSilva closed 7 years ago
0
Exception in Orthology explore pots

#259 ODiogoSilva closed 7 years ago
0
Add cooldown to sidepanel toggling

#258 ODiogoSilva closed 7 years ago
0
Plot fast switching does not disable plot type float

#257 ODiogoSilva closed 7 years ago
0
OK in taxon/file group creation should emulate Cancel when no taxa/files are selected

#256 ODiogoSilva closed 7 years ago
0
Orthology output directory button label disappears after loading data

#255 ODiogoSilva closed 7 years ago
0
Sidepanel is wild when clicking view queue in Orthology

#254 ODiogoSilva closed 7 years ago
0
Filter in groups filechooser

#253 ODiogoSilva closed 7 years ago
0
Whitespace in proteome file headers

#252 ODiogoSilva closed 7 years ago
0