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OHBA-analysis / osl-dynamics

Methods for studying dynamic functional brain activity in neuroimaging data.
https://osl-dynamics.readthedocs.io/
MIT License
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osl_inverse_model error (MATLAB implementation) #284

Closed Shrecki closed 4 days ago

Shrecki commented 4 days ago

Hello! My issue is an error in the MATLAB implementation specifically.

When running osl_inverse_model (in the hmm_1_preprocessing.m available here: https://github.com/OHBA-analysis/Quinn2018_TaskHMM/tree/master/scripts ), I'm encountering the following error:

Initialising batch system... done. Item plugin: No field(s) named montage_osl Item plugin: No field(s) named spmeeg_osl Error using spm_jobman>fill_run_job (line 472) No executable modules, but still unresolved dependencies or incomplete module inputs.

Error in spm_jobman (line 247) sts = fill_run_job('run', cjob, varargin{3:end});

Error in osl_inverse_model (line 246) spm_jobman('run',matlabbatch)

Error in hmm_1_preprocessing (line 279) D = osl_inverse_model(D,p.template_coordinates,'pca_order',50);

Error in run (line 91) evalin('caller', strcat(script, ';'));

Here are some extra informations on my system: Operating system: Ubuntu 20.04.6 LTS 64bits MATLAB version: R2021b

Any pointers to solve this issue? Cheers!

cgohil8 commented 4 days ago

Apologies, we only track issues with the Python osl-dynamics code here.

You could try creating an issue on https://github.com/OHBA-analysis/Quinn2018_TaskHMM.