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OHDSI / Achilles

Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
https://ohdsi.github.io/Achilles/
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ACHILLES_RESULTS table: ERROR: no runtime found in log file #745

Open apopassias opened 12 months ago

apopassias commented 12 months ago

In the ACHILLES_RESULT table there are entries for each analysis with id=2000000+analysis_id to store the execution time of each analysis in the column STRATUM_1.

These are to be used by cdmInpection to generate the reference document. image

All of these records have STRATUM_1 values equal to "ERROR: no runtime found in log".

Any suggestions?

apopassias commented 8 months ago

The error occurs when we run Achilles with the output folder not being empty.

MaximMoinat commented 7 months ago

Hi @apopassias, did it work with an empty achilles output folder? It might have something to do with Achilles appending to an existing log file, but I could not replicate this myself.

apopassias commented 7 months ago

Yes it works with an empty output folder.

On Fri, Apr 5, 2024, 20:16 Maxim Moinat @.***> wrote:

Hi @apopassias https://github.com/apopassias, did it work with an empty achilles output folder? It might have something to do with Achilles appending to an existing log file, but I could not replicate this myself.

— Reply to this email directly, view it on GitHub https://github.com/OHDSI/Achilles/issues/745#issuecomment-2040287618, or unsubscribe https://github.com/notifications/unsubscribe-auth/BC2PLM7Q3ZW5XGEZQCM4U3DY33L5HAVCNFSM6AAAAAA72ZC2ACVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDANBQGI4DONRRHA . You are receiving this because you were mentioned.Message ID: @.***>

fdefalco commented 7 months ago

There are a few issues that occur with the log file. If the string search fails we can see errors or in the case like this with an existing log. Part of the 2.0 rewrite of Achilles will include a totally revamped logging table for runtime.