search

OHDSI / Athena

Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
56 stars 20 forks source link

cpt4.jar #2

Closed ericaVoss closed 8 years ago

ericaVoss commented 8 years ago

It seems CPT4 reconstitution doesn’t work correctly.

Java program completes with message “Records imported: 14202. CPT successfully updated.” But the file is not written completely, it ends in the middle of line:

bug

So I had to delete this broken line and the number of CPT4 concepts imported is 11048 (v4.5) and 11057 (v5).

cgreich commented 8 years ago

Yes, we have this bug in the making. Gleb will soon release a debugging version, which will write out a whole lot of diagnostics to figure out what's going on. Hang on, please.

cgreich commented 8 years ago

@ericaVoss:

We added full error reporting to the CPT4 utility. Can you be so kind and download and run it again? And post the nagging it will produce.

ericaVoss commented 8 years ago

@cgreich on it . . .

GlebMalikov commented 8 years ago

Issue is fixed, new version is available for download.

ericaVoss commented 8 years ago

We tested this for OMOP_Vocabulary_v4.5_20150717 and it works. We will also try v5.0.

ericaVoss commented 8 years ago

Things look good on our side, closing issue.

We also redownloaded based on this comment: http://forums.ohdsi.org/t/cdm-4-5-issue-vocabulary-id-12-is-missing/718