Question: For cohorts that occur when running pathway

OHDSI / Atlas

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

http://atlas-demo.ohdsi.org/

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Question: For cohorts that occur when running pathway #2866

Closed dongyun909 closed 11 months ago

dongyun909 commented 1 year ago

Question When running PATHWAY, is it possible to know where the cohorts that are generated are stored in the CDM table? Also, if cohorts are already generated in ATLAS, will PATHWAY run without generating any additional cohorts (i.e. will PATHWAY refer to the generated cohorts when it runs)?

Actual behavior there was a problem that cohort generation took too long when using national population data.

chrisknoll commented 11 months ago

When running the pathway analysis, we will use cached results (stored in results.cohort_cache) to copy over to temp tables used in Pathway analysis. If cohorts are already generated in ATLAS, they will be cached, and therefore re-used in pathway execution.