OHDSI / Broadsea-Hades

[under development]
Apache License 2.0
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Updates to recent HADES packages and drivers #2

Open DrTTrousers opened 1 year ago

DrTTrousers commented 1 year ago

Issues: 1) Current Broadsea Hades container has a full HADES library, however the versions of DatabaseConnector and requisite drivers are out of date.

2) Does not actually contain the Achilles package necessary for Broadsea deployment

Current solution: Update the package from inside the container

# Databaseconnector is out of date so needs updating (CRAN)

>install.packages("Databaseconnector")

Then using sudo privileges (as the container doesn't seem able to pull github repo's? possibly a local issue) load the driver into the driver library for snowflake $cd /opt/hades/jdbc_drivers/ $ sudo curl -o snowflake-jdbc-3.13.28.jar https://repo1.maven.org/maven2/net/snowflake/snowflake-jdbc/3.13.28/snowflake-jdbc-3.13.28.jar

Then, git pull the achilles repo and install the package manually