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OHDSI / CommonEvidenceModel

Common Evidence Model (CEM) is a structure for standardizing evidence about drug-outcome relationship across disparate evidence sources.
Apache License 2.0
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Negative control outcome generation returning observation domain concepts #29

Open jamieweaver opened 6 years ago

jamieweaver commented 6 years ago

Negative control outcome generation for the following concept set returns observation domain concepts

{"items" :[{"concept":{"CONCEPT_ID":1118084,"CONCEPT_NAME":"celecoxib","STANDARD_CONCEPT":"S","INVALID_REASON":"V","CONCEPT_CODE":"140587","DOMAIN_ID":"Drug","VOCABULARY_ID":"RxNorm","CONCEPT_CLASS_ID":"Ingredient","INVALID_REASON_CAPTION":"Valid","STANDARD_CONCEPT_CAPTION":"Standard"},"isExcluded":false,"includeDescendants":false,"includeMapped":false},{"concept":{"CONCEPT_ID":1177480,"CONCEPT_NAME":"Ibuprofen","STANDARD_CONCEPT":"S","INVALID_REASON":"V","CONCEPT_CODE":"5640","DOMAIN_ID":"Drug","VOCABULARY_ID":"RxNorm","CONCEPT_CLASS_ID":"Ingredient","INVALID_REASON_CAPTION":"Valid","STANDARD_CONCEPT_CAPTION":"Standard"},"isExcluded":false,"includeDescendants":false,"includeMapped":false},{"concept":{"CONCEPT_ID":1115008,"CONCEPT_NAME":"Naproxen","STANDARD_CONCEPT":"S","INVALID_REASON":"V","CONCEPT_CODE":"7258","DOMAIN_ID":"Drug","VOCABULARY_ID":"RxNorm","CONCEPT_CLASS_ID":"Ingredient","INVALID_REASON_CAPTION":"Valid","STANDARD_CONCEPT_CAPTION":"Standard"},"isExcluded":false,"includeDescendants":false,"includeMapped":false}]}

ericaVoss commented 6 years ago

This is a Vocab sync issue. CEM is on an older Vocab.

We will need to think about how to handle this.

ericaVoss commented 6 years ago

@anthonysena it is hard to test for this, I'm assuming you are handling for this now?

ericaVoss commented 4 years ago

@anthonysena I think we are just excluding the wrong domains now?