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OHDSI / Cyclops

Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
http://ohdsi.github.io/Cyclops/
38 stars 32 forks source link

Rtools 3.4 #29

Closed PRijnbeek closed 8 years ago

PRijnbeek commented 8 years ago

If I install the latest Rtools version 3.4 the install of Cylops in R still wants 3.3

msuchard commented 8 years ago

I am unclear what "still wants" means here. There are no direct dependencies between the Cyclops source code and RTools (beyond gcc >= 4.6.3). I suspect there are other packages for which you have already compiled with the older compiler that no longer link when some packages are compiled with the newer compiler.

What is the error message you are getting? And steps did you take to generate that message? Plus, further info about your system (R version, package versions, etc.) would be helpful.

msuchard commented 8 years ago

You may want to also try devtools::find_rtools().

PRijnbeek commented 8 years ago

Ok let me be more clear then :)

  1. I installed the latest version of Rtools which is currently 3.4
  2. I run install_github("ohdsi/Cyclops") in R

results: popup "Install Build Tools" Building R package from source requires installation of additional build tools. Do you want to install the additional tools now?"

It then installs Rtools 3.3 and the install_github works fine afterwards. I would expect Rtools3.4 would be enough since:
devtools::find_rtools() [1] TRUE

I reproduced this by removing Rtools 3.3 and do the whole thing again.

Info: platform x86_64-w64-mingw32
arch x86_64
os mingw32
system x86_64, mingw32
status
major 3
minor 3.1
year 2016
month 06
day 21
svn rev 70800
language R
version.string R version 3.3.1 (2016-06-21) nickname Bug in Your Hair

msuchard commented 8 years ago

Pop-up error message is from devtools. Not likely a Cyclops issues. @PRijnbeek, please re-open if this issue remains after Rtools 3.4 becomes default.