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OHDSI / DbDiagnostics

Package to profile a database and execute data diagnostics based on individual analysis settings
https://ohdsi.github.io/DbDiagnostics/
Apache License 2.0
6 stars 5 forks source link

No Zip file created #20

Open mgkahn opened 1 month ago

mgkahn commented 1 month ago

DbDiagnostics runs to completion with final message saying "Final results now available in ..... " CSV files are present but no ZIP file.

R Version 4.4.1 R Studio version 2024-04.2 DbDiagnostics 1.4

See attached screenshot for variables, and output See attached screenshot for File Explorer

image image
mgkahn commented 1 month ago

Same result (no zip file) with alternative syntax for output folder path:

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clairblacketer commented 1 month ago

From @mgkahn - Three insights: If you do not have a zip command in your native shell, the zip() function in R does not throw an error (that I could find) You cannot use the ZIP package on CRAN. It does not understand the “-j” extra You must have access to a zip command in your native shell that understands the “-j” option

One thought to resolve this would be to utilize the ZIP CRAN package and remove the -j extra option (assuming it can work without)