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OHDSI / ETL-CMS

Workproducts to ETL CMS datasets into OMOP Common Data Model
Apache License 2.0
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srt-files not found #20

Closed sneakythr0ws closed 8 years ago

sneakythr0ws commented 8 years ago

I run script from unm-improvements branch and found error

Script requires ".csv.srt" files. What is it? I disabled it in this row.

ChristopheLambert commented 8 years ago

Did you run all of the steps in the README.md file, including downloading the data and setting up paths to where the data resides in the .env file? The .srt files should be created by the script from the input data, and I suspect the input data path may have not been specified in the .env file.

sneakythr0ws commented 8 years ago

Yes. I generated .csv files by CMS_SynPuf_ETL_CDM_v5.py. But I modified it to disable .srt check. The reason is that the script does not create srt-file I tried master and unm-improvements

ChristopheLambert commented 8 years ago

Try the new master branch, and use the scripts/get_synpuf_files.py script to fetch the files. The creation of .srt files used to use system commands. We now create the .srt files directly with python code.

ChristopheLambert commented 8 years ago

I verified that the .srt files are properly created by the ETL for all 20 parts.