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OHDSI / FeatureExtraction

An R package for generating features (covariates) for a cohort using data in the Common Data Model.
http://ohdsi.github.io/FeatureExtraction/
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FeatureExtraction Aborting R Session #283

Open haleyhuston1 opened 1 week ago

haleyhuston1 commented 1 week ago

Trying to use the createDefaultCovariateSettings() function in FeatureExtraction and it's aborting my R Session every time I try and run the function. I can load the library fine, I've tried:

install.packages("FeatureExtraction", type = "binary") install.packages("FeatureExtraction", dependencies = TRUE) install.packages("FeatureExtraction") renv::install("FeatureExtraction")

followed by library(FeatureExtractionm) settings <- createDefaultCovariateSettings()

And immediately get the pop-up window re "R Session Aborted" R encountered a fatal error. The session was terminated.

As part of this I also downloaded the ARM64 version of Java for R. I'm working with R 4.4.1.

anthonysena commented 1 week ago

Hi - that's unusual behavior. Using R4.4.1 is fine but ARM64 is not our recommended way of installing Java. Please follow the instructions on https://ohdsi.github.io/Hades/rSetup.html and install the 64-bit JDK as recommended. If this issue persists after installing the JDK let us know and we can continue to investigate.