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OHDSI / GIS

https://ohdsi.github.io/GIS
Apache License 2.0
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modification for Broadsea builds from github #361

Closed tibbben closed 1 month ago

tibbben commented 2 months ago

Just a few modifications to run the full set of containers using the Tufts/Broadsea-GISland.

The principal change is that I am installing an R library called plumber in the gaia-core image to provide an API to the gaia-core R package on the Gaia-core container. The API is used by the catalog container to run commands in the gaia-core package through http protocol.

kzollove commented 2 months ago

@tibbben Thanks for this PR!

If I understand correctly, the goal is to have the catalog container serve the catalog (back and front end), where a user could view the available datasets/variables in gaia-db, see what has been "loaded" into the harmonized format (i.e. ready to use downstream), as well as trigger loadVariable() using a GET request.

I am assuming you will move the "repository" directory into docker/ dir ?

tibbben commented 2 months ago

@kzollove, your understanding is correct. I just removed the repository folder from my fork of this PR. I think it should be removed in the PR as well (I see the commit I made just above).