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OHDSI / Hermes

(DEPRECATED) HERMES is a vocabulary browser tool for OMOP CDM v5
http://www.github.com/ATLAS
Apache License 2.0
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search by OMOP concept ID #17

Open vojtechhuser opened 9 years ago

vojtechhuser commented 9 years ago

I am trying to find CPT concept

CDMV:43527963   name:Unlisted multianalyte assay with algorithmic analysis  CPT:81599

for example this way: http://www.ohdsi.org/web/hermes/index.html#/concept/43527963

Why nothing is found?

also searching for "multianalyte" finds no hits.

Those concepts were in CDMV v4.

Other missing are:

CDMV,name,CPT

43527955 Unlisted molecular pathology procedure 81479 43527956 Oncology (ovarian), biochemical assays of two proteins (CA-125 and HE4), utilizing serum, with menopausal status, algorithm reported as a risk score 81500 43527957 Oncology (ovarian), biochemical assays of five proteins (CA-125, apoliproprotein A1, beta-2 microglobulin, transferrin, and pre-albumin), utilizing serum, algorithm reported as a risk score 81503 43527958 Endocrinology (type 2 diabetes), biochemical assays of seven analytes (glucose, HbA1c, insulin, hs-CRP, adoponectin, ferritin, interleukin 2-receptor alpha), utilizing serum or plasma, algorithm reporting a risk score 81506 43527959 Fetal congenital abnormalities, biochemical assays of two proteins (PAPP-A, hCG [any form]), utilizing maternal serum, algorithm reported as a risk score 81508 43527960 Fetal congenital abnormalities, biochemical assays of three proteins (PAPP-A, hCG [any form], DIA), utilizing maternal serum, algorithm reported as a risk score 81509 43527961 Fetal congenital abnormalities, biochemical assays of three analytes (AFP, uE3, hCG [any form]), utilizing maternal serum, algorithm reported as a risk score 81510 43527962 Fetal congenital abnormalities, biochemical assays of four analytes (AFP, uE3, hCG [any form], DIA) utilizing maternal serum, algorithm reported as a risk score (may include additional results from previous biochemical testing) 81511 43528050 Fetal congenital abnormalities, biochemical assays of five analytes (AFP, uE3, total hCG, hyperglycosylated hCG, DIA) utilizing maternal serum, algorithm reported as a risk score 81512 43527963 Unlisted multianalyte assay with algorithmic analysis 81599

leeevans commented 9 years ago

CPT (version 4) is one of the restricted vocabularies. Only the unrestricted vocabularies can be made publicly available. Therefore there are no CPT codes included in the publicly accessible installation of HERMES.

cgreich commented 9 years ago

Which brings up a good point: As soon as we have the permission to show folks after a click-through "I agree" page, it could be made available. CPT is very core to what we are doing, so we should consider that.

fdefalco commented 9 years ago

I would happily implement that 'i agree' page. What is it we have to receive agreement on? Do we need to keep record of anything for legal purposes?

cgreich commented 9 years ago

Yes, we do. We are implanting this as we speak in the download page. And I am arguing with the AMA. But whatever the text is, you can already prepare some yadayada.

From: Frank DeFalco [mailto:notifications@github.com] Sent: Thursday, February 19, 2015 10:58 AM To: OHDSI/Hermes Cc: Christian Reich Subject: Re: [Hermes] search by OMOP concept ID (#17)

I would happily implement that 'i agree' page. What is it we have to receive agreement on? Do we need to keep record of anything for legal purposes?

— Reply to this email directly or view it on GitHub https://github.com/OHDSI/Hermes/issues/17#issuecomment-75077111 . https://github.com/notifications/beacon/AAuxfoTV4StaNmzDc9IaZk_S04Y9HB_Lks5ntf-ggaJpZM4Dil98.gif