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OHDSI / Legend

An R package implementing Large-Scale Evidence Generation and Evaluation in a Network of Databases (LEGEND).
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Finding outcome definitions, their concept sets, and how to translate those to ICD-10 code #13

Open 111yunxiang opened 2 years ago

111yunxiang commented 2 years ago

i cannot find the SNOMED ID the articiles showed

schuemie commented 2 years ago

Which SNOMED IDs are you specifically looking for? Which paper specifically are you referring to?

111yunxiang commented 2 years ago

hypertension published in Lancet 2019. The choose of effectiveness and safety outcomes in your article is so cool! I want to find the specific ICD-10 code but your used SNOMED, so i want to find correct SNOMED id and transform it to ICD-10 in my study

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在 2022年8月11日，14:59，Martijn Schuemie @.***> 写道：

 Which SNOMED IDs are you specifically looking for? Which paper specifically are you referring to?

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.

schuemie commented 2 years ago

Translating the concept sets to ICD-10 codes can be done with the following steps:

  1. Go the cohorts folder.
  2. Open the JSON file of your outcome of interest, and copy the content to your clipboard
  3. Go to an ATLAS instance, for example the public OHDSI ATLAS.
  4. Click 'Cohort Definitions', then 'New Cohort'.
  5. Open the 'Export' tab, select 'JSON', and replace the JSON in the edit box with the JSON on your clipboard.
  6. Click 'Reload'.
  7. Go to the 'Concept Sets' tab, select the concept set you're interested in, and click on 'Included source codes'.
  8. Under 'Vocabulary', select 'ICD10M'.
  9. The 'Code' column now contains the ICD-10 codes
111yunxiang commented 2 years ago

THANK YOU VERY MUCH! SO COOL!

At 2022-08-11 19:18:40, "Martijn Schuemie" @.***> wrote:

Translating the concept sets to ICD-10 codes can be done with the following steps:

Go the cohorts folder. Open the JSON file of your outcome of interest, and copy the content to your clipboard Go to an ATLAS instance, for example the public OHDSI ATLAS. Click 'Cohort Definitions', then 'New Cohort'. Open the 'Export' tab, select 'JSON', and replace the JSON in the edit box with the JSON on your clipboard. Click 'Reload'. Go to the 'Concept Sets' tab, select the concept set you're interested in, and click on 'Included source codes'. Under 'Vocabulary', select 'ICD10M'. The 'Code' column now contains the ICD-10 codes

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>