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OHDSI / MIMIC

MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
Apache License 2.0
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Location needs to be set and delimiter needs an extra backslash for the bq script to work #11

Open tomersagi opened 2 years ago

tomersagi commented 2 years ago

Hi, When trying to run the vocabulary refresh script I found out the following:

  1. If you create your google cloud bigquery dataest in specific location (europe-west4 in my case) You need to set your location explicitly in the bq command line and your script sets it to US by default.
  2. The \t delimiter is not passed correctly to bash and you need an extra \ in the vocabulary_refresh.conf to make it work.

Cheers Tomer