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OHDSI / MIMIC

MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
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I can't find the file name in vocabulary_refresh. #23

Closed Kisooofficial closed 1 year ago

Kisooofficial commented 1 year ago

Hello, I am a university student in Korea who is doing a process to convert MIMIC4 to OCOP CDM. I downloaded whole files in this github. Now, the files are in C:\Users\MyName\MIMIC-master\vocabulary_refresh But, I can't find the file corresponding to vocabulary_2020_09_11. Have you ever changed this file name? I want to find local_athena_csv_path.

mik-ohdsi commented 1 year ago

Hi @Kisooofficial - we do not keep the vocabulary files in this github (would become pretty large). You are supposed to download your own set of vocabularies from Athena, then add the custom local vocabularies (2bn ids). Find attached information about the current vocabulary table in the latest ETL conversion for your reference. vocabulary_table.csv

Kisooofficial commented 1 year ago

Thank you for comment. I've already resolved problems. Thank you.