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OHDSI / MIMIC

MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
Apache License 2.0
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Inquiries about full.etlconf #28

Closed jiwoonoh closed 1 year ago

jiwoonoh commented 1 year ago
Screen Shot 2023-07-03 at 10 50 08 AM

Hi, when I try to run python scripts/run_workflow.py -e conf/full.etlconf -c conf/workflow_ddl.conf, I get this error:

Screen Shot 2023-07-03 at 10 51 06 AM

Am I supposed to change all the variables in conf file? If so, where do I find the appropriate datasets? Thank you for your help.