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OHDSI / OncologyWG

Oncology Working Group Repository
https://ohdsi.github.io/OncologyWG
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Grade: Map Nebraska Lexicon to Cancer Modifier #622

Closed kzollove closed 8 months ago

kzollove commented 8 months ago

Destandardize and map to Cancer modifier:

grade_Nebraska_Lexicon.csv

kzollove commented 8 months ago

Unqualified "histologic grade" terms (3186481, 3187219, 3178338, 3170524) could eventually be mapped to "grade" or "histologic grade" umbrella term.

kzollove commented 8 months ago

These concepts were destandardized, but have no direct maps in Cancer Modifier:

<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:x="urn:schemas-microsoft-com:office:excel" xmlns="http://www.w3.org/TR/REC-html40">

concept_id | concept_name -- | -- 3186481 | Histologic grade 3187219 | Histologic grade of excised malignant neoplasm 3178338 | Histologic grade of excised malignant neoplasm of colon 3170524 | Histologic grade of excised malignant neoplasm of lung 3196710 | Intermediate to high grade histologic differentiation 3194224 | Low to intermediate grade histologic differentiation 3190559 | Nuclear grade of ductal carcinoma in situ in malignant neoplasm of breast 3192778 | Pap smear with atypical cells but high grade squamous intraepithelial lesion cannot be excluded 3196195 | Surgical distal margin involved by adenoma with high-grade dysplasia 3195575 | Surgical distal margin involved by adenoma with low-grade dysplasia 3198481 | Surgical mucosal margin involved by adenoma with high-grade dysplasia 3191997 | Surgical mucosal margin involved by adenomawith low-grade dysplasia

kzollove commented 8 months ago

concept_NebraskaLexicontoCM_grade.csv concept_relationship_NebraskaLexicontoCM_grade.csv