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OHDSI / StudyProtocolSandbox

This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
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Unable to install concept prevalence #57

Open SSMK-wq opened 4 years ago

SSMK-wq commented 4 years ago

Hello Everyone,

I was trying to execute the concept prevalence package and encountered the below error when I executed the below line of code

devtools::install_github("OHDSI/StudyProtocolSandbox/ConceptPrevalence")

Downloading GitHub repo OHDSI/StudyProtocolSandbox@master
"C:\PROGRA~1\Git\cmd\git.exe" clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/NEONKID/RCDM-ETL C:\Users\test\AppData\Local\Temp\RtmpoDDE3h\remotes5fe862d7185f/OHDSI-StudyProtocolSandbox-536420f/ConceptPrevalence/../RCDM-ETL
"C:\PROGRA~1\Git\cmd\git.exe" clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/aostropolets/ConceptPrevalence.git C:\Users\test\AppData\Local\Temp\RtmpoDDE3h\remotes5fe862d7185f/OHDSI-StudyProtocolSandbox-536420f/ConceptPrevalence/../ConceptPrevalence
2020-04-05 17:29:57 running command '"C:\PROGRA~1\Git\cmd\git.exe" clone --depth 1 --no-hardlinks --recurse-submodules https://github.com/aostropolets/ConceptPrevalence.git C:\Users\test\AppData\Local\Temp\RtmpoDDE3h\remotes5fe862d7185f/OHDSI-StudyProtocolSandbox-536420f/ConceptPrevalence/../ConceptPrevalence' had status 128
Error: Failed to install 'ConceptPrevalence' from GitHub:
  Command failed (128)

Can someone help me with this please?

lynch-bl commented 4 years ago

hi, I just want to second this. I am having the same problem with the same error code. Any help here would be greatly appreciated. Thanks

aostropolets commented 4 years ago

Hey @SSMK-wq and @lynch-bl! Thanks a lot for the interest! The study was moved here: https://github.com/ohdsi-studies/ConceptPrevalence . Did you get the old link on the forum?

SSMK-wq commented 4 years ago

Hello @aostropolets ,

Thanks for the response. It works with the new link. Yes, I found the old link from this forum https://forums.ohdsi.org/t/network-study-concept-prevalence/6562.

Thanks for sharing the updated link. I have shared the results to the mail id mentioned in the forum.

aostropolets commented 4 years ago

@SSMK-wq Thanks a lot for sharing the results! I didn't get them. Maybe, the email didn't get through? If you ping me on that email or provide yours, we can figure it out. Thanks again!

SSMK-wq commented 4 years ago

Hello @aostropolets ,

I mailed the results to the email address mentioned in github - ao2671@cumc.columbia.edu.

I have also sent a test mail now without attachments.

My email id - ephssmk@nus.edu.sg

lynch-bl commented 4 years ago

Hi @aostropolets , thanks for clarifying. So actually my error was slightly different to SSMK-wq in that I was not calling on the link from a forum post but instead was trying to install the DEADModel package which calls on this package as a required prerequisite I think. But it must still be referencing the older link and thus failing. I will try to install Concept Prevalence from the new link first and see how I get on. Thanks