OHDSI / Vocabulary-v5.0

Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
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Deprecated Codes - Drugs and Procedures #264

Open noahgengel opened 4 years ago

noahgengel commented 4 years ago

Hello,

I found a few non-standard codes that are 'depreciated' and currently do not map to any standard concept. If possible, it would be helpful to establish a 'map' between this code and an existing standard code (or, if needed, a newly-created standard code).

Procedure

Drugs

^ for the drugs: these have many 'Consists of (RxNorm)' and 'Has dose form (RxNorm)' relationships. These is, however, no direct 'maps to' concept.

cgreich commented 4 years ago

All of these are deprecated concepts. Deprecated by the source (NLM and CMS). That's the short answer. The long answer is:

noahgengel commented 4 years ago

@cgreich Thank you for the reply. Please let me know should you choose to de-depreciate the ICD-10-PCS.

noahgengel commented 4 years ago

@cgreich I noticed that a few of the depreciated drug codes I mentioned (1707803: Vancomycin 6.67 MG/ML Injectable Solution, 19130210: Vancomycin 8.33 MG/ML Injectable Solution, 19130211: Vancomycin 7 MG/ML Injectable Solution) do not have standard concepts with the same dosage (only 50 MG/ML available). Would it be possible to create new concept_ids for Vancomycin?

ekorchmar commented 4 years ago

Hello!

ICD10PCS codes will be restored next release. We already keep CPT4 and HCPCS codes standard beyond their "expiration date", so it will be the same for ICD too.

As for RxNorm, source logic behind concept deprecation is opaque. We are not sure how they get their concepts in first place and why are they getting deprecated (were they wrong in the first place or just are no longer marketed?).

Possible solutions would be to once again keep all concepts alive and standard; or to automatically copy deprecated RxNorm concepts to RxNorm Extension each release. Paging @aostropolets - it is her area of expertise.

TinyRickC137 commented 2 weeks ago

Just an update on the issue - it is solved for ICD10PCS (de-deprecation, zombie concepts)

It is not solved for RxNorm / RxNorm Extension. I hope we will soon come for the Drug domain overhaul, let's keep this issue as a reminder.

PS: I like @ekorchmar 's idea to automatically create RxNorm Extension

noahgengel commented 2 weeks ago

@TinyRickC137 - I am glad people are still tackling these issues! I hope all the work with the greater initiative is going well.