search

OHDSI / Vocabulary-v5.0

Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
The Unlicense
214 stars 75 forks source link

Missing mapping to ATC and Ingredients for drug_concept_id #433

Open ttsv opened 3 years ago

ttsv commented 3 years ago

Hi there, There are missing ancestors in concept_ancestor table and mapping to ATC and Ingredient for the following concept_id: 36410322 36410282

36410282 3 ML insulin degludec 100 UNT/ML Injectable Solution Drug RxNorm Extension Quant Clinical Drug S OMOP3102324 36410322 3 ML insulin degludec 100 UNT/ML Injectable Solution [Tresiba] by Novo Nordisk Drug RxNorm Extension Marketed Product S OMOP3102364

Alexdavv commented 3 years ago

Hi @ttsv,

Thanks for reporting! Unfortunately, it's a bug in the RxNorm Extension script. Here is the forum post with some details.

It's very likely that the ATC issue is caused by the same RxNorm/RxE problem, but it needs additional investigation. @aostropolets Can you please check?

Alexdavv commented 3 years ago

Quoting the forum: The problem is missing links/attributes in the RxNorm Extension Standard concepts that are being lost (and not replaced by the RxNorm equivalents) during the process of RxNorm Extension to RxNorm ingredient replacement.

@ekorchmar I know you know it, but let's document it: The ingredient is not the only case. Some others (e.g., ​36410316) are linked to ingredients, but not linked to the respective form since 36409557 was replaced by 1356056.

ATC inherit the problem and should be rerun once RxNorm/RxE are fixed.