OHDSI / Vocabulary-v5.0

Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
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Missing Concept Ancestor Relationship for ADO-Trastuzumab Emtansine #550

Open cukarthik opened 2 years ago

cukarthik commented 2 years ago

I was looking at ado-trastuzumab emtansine 160 MG Injection [KADCYLA] and it maps to RxNorm code 1658091. When I look at the concept ancestor table or concept relationship table I can't get to the RxNormExtention code for ado-Trastuzumab emtansine. I happened to run into this issue but I think this might exist for other cancer related drugs, especially if I'm using HemOnc.

Tagging @cgreich

cgreich commented 2 years ago

That's an issue of the ingredient vs precise ingredient. The precise ingredient is used in the RxNorm name, but the generic ingredient is in the path of the hierarchy. It's a tricky issue, which is to decide whether trastuzumab and ado-trastuzumab emtansine.

cukarthik commented 2 years ago

So this is the case even if I go through ATC for ado-trastuzumab emtansine? I see potential children via the 'Drug class of drug (OMOP)' relationship, but these children are not in the concept_ancestor table.

cgreich commented 2 years ago

Not sure I follow. The issue is that RxNorm makes no distinction between the precise ingredients, even though it uses the precise ingredient in the concept_names. They are all trastazumabs.

vladkorsik commented 2 years ago

Not sure I follow. The issue is that RxNorm makes no distinction between the precise ingredients, even though it uses the precise ingredient in the concept_names. They are all trastazumabs.

Oh, but emtansine is not the same as anion or cation usually defining Precise Ingredient Class by RxNorm. This is a relevant substance directly linked to Trastuzumab making the ingredient pharmacologically distinct from trastuzumab and its biosimilars. The concurrent issue - emtansine is not used as single agent therapeutics, that is why it can not be used not create the parent-child axis in RxNorm. Does it need to be raised somewhere outside the Github to make the Drug conjugates a RxNORM ingredients?

dimshitc commented 2 years ago

Vlad, do you have a list of such drugs? So we can show them to RxNorm people.

On Fri, Oct 29, 2021 at 7:26 PM Vlad @.***> wrote:

Not sure I follow. The issue is that RxNorm makes no distinction between the precise ingredients, even though it uses the precise ingredient in the concept_names. They are all trastazumabs.

Oh, but emtansine is not the same as anion or cation usually defining Precise Ingredient Class by RxNorm. This is a relevant substance directly linked to Trastuzumab making the ingredient pharmacologically distinct from trastuzumab and its biosimilars. The concurrent issue - emtansine is not used as single agent therapeutics, that is why it can not be used not create the parent-child axis in RxNorm. Does it need to be raised somewhere outside the Github to make the Drug conjugates a RxNORM ingredients?

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dimshitc commented 2 years ago

On behalf of @vladkorsik irinotecan liposomal doxorubicin liposome paclitaxel protein-bound ado-trastuzumab emtansine trastuzumab deruxtecan

We sent the email to RxNorm people describing the issue that precise ingredients have now forms really different from the actual ingredients

Alexdavv commented 2 years ago

We're currently working on the proposal around the handling of the precise ingredients.