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OHDSI / Vocabulary-v5.0

Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
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Adding Concept IDs for MonkeyPox #666

Closed krevett-iqvia closed 2 years ago

krevett-iqvia commented 2 years ago

We are requesting that the following codes be added to the next vocabulary release -they are all focused on adding codes for MonkeyPox.

Event: Code Type Code MonkeyPox testing: HCPCS/CPT 87593 MonkeyPox vaccine: ACAM2000 HCPCS/CPT 90622 MonkeyPox vaccine: JYNNESOS HCCPS/CPT 90611 MonkeyPox treatment: NDC 50072001030

We are of course focusing a lot of resources to studying MonkeyPox - so updating the requisite vocabulary is critical to us. @cgreich @TinyRickC137

krevett-iqvia commented 2 years ago

Hi, any updates on these important additions to the vocab? @m-khitrun @cgreich Thank you!

mik-ohdsi commented 2 years ago

Hi @krevett-iqvia , apparently the codes that you are showing may only appear in CPT4 and while we wanted to refresh, our source data in UMLS has not been updated in the AA release of UMLS this year, but we will have to wait for the AB release. The NDC item is in Athena now, after the last release. The vaccines can be found as standard concepts in RxNorm of course. I guess we have to be a little patient until the new codes show up in the sources. Hope this helps!

Alexdavv commented 2 years ago

Given the urgency around it, let’s add the stuff to the OMOP Extension and push it with the technical release planned on the next week.

MariaRohozhkina commented 2 years ago

Hi @krevett-iqvia! We have some concepts in RxNorm, SNOMED and LOINC, please, check it and maybe they can be used for studying MonkeyPox: 780270 for MonkeyPox treatment: NDC 50072001030 37003266 for MonkeyPox vaccine: JYNNESOS HCCPS/CPT 90611 44807115/3034305 for MonkeyPox testing: HCPCS/CPT 87593 1396494 for MonkeyPox vaccine: ACAM2000 HCPCS/CPT 90622

krevett-iqvia commented 2 years ago

Thank you @MariaRohozhkina for this update. I think what we have should be enough to get started.

krevett-iqvia commented 2 years ago

@MariaRohozhkina @cgreich @mik-ohdsi : We have checked on our end to see whether the MonkeyPox vocab has been augmented to include the set of codes included in the original ticket - what we find available are the following: concept_code 90611 (RxNorm) and 50072001030 (NDC). What is the current status wrt to the set of codes? I believe you are planning to MonkeyPox vaccine codes as an OMOP extension? Could you let me know what the current status of that process is please? Thank you - this is an urgent request!!!

mik-ohdsi commented 2 years ago

Hi @krevett-iqvia would you be open to come together for a meeting and discuss strategies for you to cope with the missing CPT4 codes for a period of time? Creating this in OMOP extension is not really helpful, for one given the fact that in about 1 month it starts becoming available in UMLS (and shortly after it could appear in Athena) and then the only thing this would improve is availability with a normal concept ID vs a 2 billion local one so that for one month you could use it for network studies. If you are however doing research on your own datasets, it is not really making a difference.

Feel free to drop me an email at michael.kallfelz@odysseusinc.com with some possible timeslots.

Thanks ~ Mik