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OHDSI / Vocabulary-v5.0

Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
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mapping to a drug without hierarchy to ingredient #730

Open dimshitc opened 1 year ago

dimshitc commented 1 year ago
this looks like a good mapping on at a first glance, but it's not: 42656228 doesn't have Ingredient as an ancestor (irinotecan liposomal became Precise Ingredient) J9205 | 1314552 | Injection, irinotecan liposome, 1 mg | 42656228 | irinotecan liposomal Injectable Solution [Onivyde] -- | -- | -- | -- | --
mik-ohdsi commented 1 year ago

not quite sure why one would map to the branded drug from this HCPCS code without reference to a brand, anyway... Maybe because it seems to be the only product... Would you rather target the Clinical Drug Form? But then we still have the Precise Ingredient, which to me seems the actual problem to solve... So, you would skip all those levels and go to the pure ingredient right away?

dimshitc commented 1 year ago

No, I mean that 42656228irinotecan liposomal Injectable Solution [Onivyde] Doesn't have ancestor_concept_id with the class = Ingredient. It's ingredient got deprecared.

On Tue, 6 Dec 2022 at 23:15, Michael Kallfelz @.***> wrote:

not quite sure why one would map to the branded drug from this HCPCS code without reference to a brand, anyway... Maybe because it seems to be the only product https://www.hipaaspace.com/medical_billing/crosswalk.services/hcpcs.to.ndc.mapping/j9205... Would you rather target the Clinical Drug Form https://athena.ohdsi.org/search-terms/terms/42656227? But then we still have the Precise Ingredient, which to me seems the actual problem to solve... So, you would skip all those levels and go to the pure ingredient https://athena.ohdsi.org/search-terms/terms/1367268 right away?

— Reply to this email directly, view it on GitHub https://github.com/OHDSI/Vocabulary-v5.0/issues/730#issuecomment-1340080915, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACBMA7ZK57XHOCMWEIKCQX3WL63H3ANCNFSM6AAAAAASSLR2TA . You are receiving this because you authored the thread.Message ID: @.***>

TinyRickC137 commented 1 year ago

True story, this is a known issue, that has to be addressed. Adding other related issues

https://github.com/OHDSI/Vocabulary-v5.0/issues/550 https://github.com/OHDSI/Vocabulary-v5.0/issues/433