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OHNLP / MedTagger

MedTagger is a light weight clinical NLP system built upon Apache UIMA.
Apache License 2.0
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MedTagger Output #21

Open MayeeshaHumaira opened 1 year ago

MayeeshaHumaira commented 1 year ago

Hello, I am trying to detect Delirium using MedTagger. So I have included the path of the delirium rules. But when I see the output I see MedTagger is detecting "cough" as the delirium-related word. So my question is does the MedTagger use only the rules I gave it or other rules related to different diseases alongside the rules I stated to give an output?

nadimpas commented 1 year ago

Hello,

Even I am getting the same issue. It is detecting other diseases even though delirium rules are given. Any idea or help on this ?

qqndrew commented 1 year ago

Hi, This issue is actually known/we were working on a fix, basically the PASC aho-corasick lookup was hardcoded in by default and we were investigating why. This should now be fixed as of MedTagger v1.0.49

nadimpas commented 1 year ago

Hey @qqndrew , The latest version does not process the output. The output file does not contain the predictions. Can you please check, I am trying to use Delirium rules from AgingNLP/delirium as ruledir.

qqndrew commented 1 year ago

@sunyangfu would be better able to help you with above issue

sunyangfu commented 1 year ago

Yes, I have scheduled a time with @nadimpas to go over the issues