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OLC-Bioinformatics / ConFindr

Intra-species bacterial contamination detection
https://olc-bioinformatics.github.io/ConFindr/
MIT License
22 stars 8 forks source link

ConFindr conda install dependencies can't be solved #20

Closed crashfrog closed 1 year ago

crashfrog commented 3 years ago 
$ conda --version
conda 4.8.3
$ conda install -c bioconda confindr      
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: / 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                          

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions
crashfrog commented 3 years ago

Oh, I think I may have identified the issue - the Bioconda recipe depends on rauth, which isn't actually in bioconda, it's in conda-forge. That might be enough for me to get it working.

SShaminur commented 3 years ago

Can be solved via create a new environment in conda and hit

conda install confindr

Ref here