OLC-Bioinformatics / ConFindr

Intra-species bacterial contamination detection
https://olc-bioinformatics.github.io/ConFindr/
MIT License
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libgfortran.so.3: cannot open shared object file: No such file or directory #61

Open AKWB opened 2 months ago

AKWB commented 2 months ago

Hi there,

I installed confindr via conda and face the error below.

Any suggestions are very welcome. THANKS!

Operating system: Ubuntu 22.04.3 LTS

confindr -h Traceback (most recent call last): File "/usr/local/tools/miniconda/envs/confindr/bin/confindr", line 7, in from confindr_src.confindr import main File "/usr/local/tools/miniconda/envs/confindr/lib/python3.5/site-packages/confindr_src/confindr.py", line 2, in from confindr_src.methods import check_acceptable_xmx, check_for_databases_and_download, check_valid_base_fraction, \ File "/usr/local/tools/miniconda/envs/confindr/lib/python3.5/site-packages/confindr_src/methods.py", line 10, in import numpy as np File "/usr/local/tools/miniconda/envs/confindr/lib/python3.5/site-packages/numpy/init.py", line 142, in from . import add_newdocs File "/usr/local/tools/miniconda/envs/confindr/lib/python3.5/site-packages/numpy/add_newdocs.py", line 13, in from numpy.lib import add_newdoc File "/usr/local/tools/miniconda/envs/confindr/lib/python3.5/site-packages/numpy/lib/init.py", line 8, in from .type_check import * File "/usr/local/tools/miniconda/envs/confindr/lib/python3.5/site-packages/numpy/lib/type_check.py", line 11, in import numpy.core.numeric as _nx File "/usr/local/tools/miniconda/envs/confindr/lib/python3.5/site-packages/numpy/core/init.py", line 14, in from . import multiarray ImportError: libgfortran.so.3: cannot open shared object file: No such file or directory