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OLC-Bioinformatics / ConFindr

Intra-species bacterial contamination detection
https://olc-bioinformatics.github.io/ConFindr/
MIT License
22 stars 8 forks source link

Fix Issue #57 #65

Closed pcrxn closed 1 week ago

pcrxn commented 1 week ago

This PR fixes #57 by adding logic for both reading files within a provided -db path and writing files to a new dir -tmp. Also did some small refactoring in test_confindr.py and updated an old link in usage.md that pointed towards the old FigShare test dataset.

pcrxn commented 1 week ago

@adamkoziol The CircleCI test appears to be failing due to ssh or git not being installed in the VM image used for testing. We can address this before merging the v0.8.2-dev branch into main.