This changes the alignments algorithm a bit to use parallel. The main sbatch file also calls this task favoring it instead of pcp.
This rake task does not use the alignment cache, so that bit has been removed from submit_pipeline.sh. It also is very stable so there's no need for that comment anymore. (I guess using pcp was the cause of the instability?).
This changes the alignments algorithm a bit to use
parallel
. The main sbatch file also calls this task favoring it instead ofpcp
.This rake task does not use the alignment cache, so that bit has been removed from
submit_pipeline.sh
. It also is very stable so there's no need for that comment anymore. (I guess usingpcp
was the cause of the instability?).