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OSC / phylogatr-web

The web app for the Phylogatr Project - https://phylogatr.org/
https://phylogatr.org/
MIT License
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full download error #73

Open shastara opened 2 years ago

shastara commented 2 years ago

Search Results All

Job: 19449517 has status: completed 82922 species found for search 2.14 GB estimated uncompressed package size, excluding metadata Wrote fasta files for 8292/82922 species 4% Job completed but results not yet available. Either the NFS sync has not completed yet, or the job that should have produced your results failed. To help debug, debug information is below this warning. Showing contents of /fs/scratch/PAS1604/results/owens-quick/19449517.out:

https://phylogatr.osc.edu/searches/19449517?results_format=tgz

johrstrom commented 2 years ago

There seems to be a bug with how long the filename is. This is a bug.

Gem::Package::TooLongFileName: File "phylogatr-results/Bacillariophyceae/Bacillariales/Bacillariaceae/Pseudo-nitzschia-calliantha/Pseudo-nitzschia-calliantha-RIBULOSE-1
,5-BISPHOSPHATE-CARBOXYLASE-OXYGENASE-LARGE-SUBUNIT-(RBCL)-GENE.fa" has a too long name (should be 100 or less)
/app/app/models/search_results.rb:159:in `block (4 levels) in write_tar'
/app/app/models/search_results.rb:157:in `each'
/app/app/models/search_results.rb:157:in `block (3 levels) in write_tar'
/usr/share/gems/gems/activerecord-5.0.6/lib/active_record/relation/delegation.rb:38:in `each'
/usr/share/gems/gems/activerecord-5.0.6/lib/active_record/relation/delegation.rb:38:in `each'
/app/app/models/search_results.rb:156:in `each_with_index'
johrstrom commented 2 years ago

I'm unable to quickly find the search query you're using to pull this. Do you know the search query I can use to replicate this?