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OSCA-source / OSCA.advanced

Advanced steps of the OSCA book
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basilisk-related error in more-reddim.R #7

Closed vjcitn closed 1 year ago

vjcitn commented 2 years ago

OSCA.advanced failed to build in an all night session. So I am running vignette code "by hand". Here's the first error encountered in an alphabetically ordered traversal of Rmd in inst/book.

rstudio@f105777f44b2:~/OSCA.advanced/inst/book$ tail logem.txt

> reducedDim(sce.zeisel, "dens-SNE") <- dt

> dm <- densmap(reducedDim(sce.zeisel, "PCA"), dens_frac = 0.4, 
+     dens_lambda = 0.2)
Error in checkForRemoteErrors(lapply(cl, recvResult)) : 
  one node produced an error: could not find function "activateEnvironment"
Calls: lapply ... basiliskStart -> clusterCall -> checkForRemoteErrors
recover called non-interactively; frames dumped, use debugger() to view
alanocallaghan commented 1 year ago

Builds okay now, this must've been a broken push to densvis, sorry about that