Juypter notebook crashing when trying to retrieving EK60 echosounder data

General description of problem

Jupyter notebook crashing when trying to run the data retrieving part of the notebook.

Computing environment

Required

Echoshader version: 0.1.dev142+gf65e218
How echoshader was installed (e.g., conda or pip): conda
Operating system: Ubuntu 22.04 via WSL2 on Windows 10

Minimum example

Required: A minimum code snippet that reproduces your problem. The following code reproduces the errors I encountered:

for desired_raw_file_url in desired_raw_file_urls:
    raw_fpath = Path(desired_raw_file_url)

    try_times = 0
    while True:
        try_times += 1

        if try_times > 2:
            print(f"Failed to process raw file {raw_fpath.name}: {e}.")
            break

        try:
            # Access file directly from S3 to create a converted EchoData object in memory
            ed = ep.open_raw(
                f"{desired_raw_file_url}",
                sonar_model='ek60'
            )

            # Use the EchoData object "ed" to generate calibrated and
            # computed MVBS files that will be saved to netcdf
            ds_Sv = ep.calibrate.compute_Sv(ed)

            ds_MVBS = ep.preprocess.compute_MVBS(
                ds_Sv,
                range_meter_bin=1,  # in meters
                ping_time_bin='1800s'  # in seconds
            )

            ds_MVBS.to_netcdf(calibrated_dpath / f"MVBS_{raw_fpath.stem}.nc")

            # release to avoid memory overflow
            del ed
            del ds_Sv
            del ds_MVBS

            gc.collect()

        except Exception as e:
            print(f"Failed to process raw file {raw_fpath.name}: {e}. Execute again")
            continue

        break

Error message printouts

Required: Copy-paste the entire error messages you encounter here. Below is the error messages I received when running the above code:

Canceled future for execute_request message before replies were done

The Kernel crashed while executing code in the the current cell or a previous cell. Please review the code in the cell(s) to identify a possible cause of the failure. Click [here for more info. View Jupyter log for further details.

Provide an example file

Required: An example file that allow reproducing the problem.

Link to an example raw file: SOME_ONLINE_LOCATION. Smaller files are strongly preferred (e.g., <25MB for AZFP and EK60, <100MB for EK80).
Raw file sensor model: (FOR EXAMPLE: Simrad EK60)

Troubleshooting

Optional but preferred: Explain any steps that you have taken to identify the cause of conversion error.

OSOceanAcoustics / echoshader