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OSS-Lab / MetQy

Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
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how to import the blastkoala results to MetQy #7

Open cabraham03 opened 3 years ago

cabraham03 commented 3 years ago

Hi, I have some bacteria genomes (Vibrio vulnificus strains), it was assembled using Spades, and then I use the generated contigs to generate a file.faa using prokka, an then I used it to generate a list of KO in blastKOALA.

my question is, it is possible to analyze those data with MetQy ? does anyone have a pipeline ??? or an example for bacteria genomes ??

Thanks so much

asmvernon commented 3 years ago

Hi Abraham, Could you provide more info about the analysis you want to do? What is the expected outcome or the question you're trying to answer?

All the best, Andrea

-- Sent from Android

Andrea Martinez Vernon, PhD LinkedIn: https://www.linkedin.com/in/andrea-martinez-vernon/

On Wed, 9 Jun 2021, 10:36 pm Abraham, @.***> wrote:

Hi, I have some bacteria genomes (Vibrio vulnificus strains), it was assembled using Spades, and then I use the generated contigs to generate a file.faa using prokka, an then I used it to generate a list of KO in blastKOALA.

my question is, it is possible to analyze those data with MetQy ? does anyone have a pipeline ??? or an example for bacteria genomes ??

Thanks so much

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