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OSU-BMBL / scDEAL

Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
Apache License 2.0
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Hi how can I reproduce this article and start from that aspect #10

Open zequanhan opened 1 year ago

zequanhan commented 1 year ago

Hi how can I reproduce this article and start from that aspect？

juychen commented 1 year ago

Hi， please use follow the instruction and load the pretrained checkpoints.

zequanhan commented 1 year ago

Your article is not only precise in words, but also very convincing in content. I think your writing style is concise, smooth and natural, and very attractive. But I have some questions about scDEAL: 1. When I run with my own data, the following will always appear: _File "scmodel.py", line 538, in run_main Ytest = adata.obs['sensitive']. I changed the name of your data and rerun it according to your flow, and there are the same errors.

  1. The last file I got. h5ad had only _(obs: 'n_genes', 'n_genes_by_counts', 'total_counts', 'total_counts_mt-', 'pct_counts_mt-', 'total_counts_rps', 'pct_counts_rps', 'total_counts_rpl', 'pct_counts_rpl', 'leiden', 'leiden_origin', 'sens_preds_pret', 'sens_label_pret', 'sens_preds', 'sens_label', 'restpreds') under obs

I hope to get your reply.