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OSU-BMBL / scDEAL

Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
Apache License 2.0
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Cannot find ‘output model‘ in the directory ’saved/models. ‘ #2

Closed CunJ1n closed 1 year ago

CunJ1n commented 1 year ago

Dear Professor Chen： Thank you very much for your new method, which has brought me new ideas, but I did not see the expected results when running the program. The file is prepared to be consistent with your tutorial and run according to the sample code. However, in bulkmode.py step , only "two databases combine" is returned, I cannot find ‘output model‘ in the directory ’saved/models. ‘ Any suggestions on this would be appreciated. Thank you very much.

python bulkmodel.py --drug 'I-BET-762' --dimreduce 'AE' --encoder_h_dims "256,256" --predictor_h_dims "128,64" --bottleneck 256 --data_name 'GSE110894' --sampling 'SMOTE' --dropout 0.3 --printgene 'F' -mod 'new'

two databases combine

juychen commented 1 year ago

Hi, we have edited the code to fix this. Thanks