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OSU-SRLab
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MANTIS
Microsatellite Analysis for Normal-Tumor InStability
GNU General Public License v3.0
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Do not prepend `chr` to BED
#65
nh13
closed
2 years ago
0
Use the FASTA index to get chromosome ordering
#64
nh13
opened
2 years ago
0
Fix version number in usage
#63
nh13
closed
2 years ago
0
Add bioconda badge
#62
nh13
closed
2 years ago
0
Print out missing modules
#61
nh13
closed
2 years ago
0
Error with k-mer repeat count calculations; terminating program, which seems to be triggered by "_multiprocessing.SemLock Permission Denied"
#60
HuangRuocheng
closed
2 years ago
1
typo in module checking
#59
frederic-michaud
opened
3 years ago
1
Running Mantis on WGS Sample
#58
ghosholivia
opened
3 years ago
0
can't finish the process
#57
RiMaxim
opened
3 years ago
8
Is it possible that using MANTIS to analyze RNAseq data?
#56
hqu-arcus
closed
4 years ago
2
About MS loci BED file used in MANTIS
#55
Clouate
closed
4 years ago
1
Failed to fetch sequence; Error with k-mer repeat count calculations; terminating program.
#54
JessicaRoelands
closed
4 years ago
5
fix interpreter mismatch; #ISSUE 52
#53
lozybean
closed
4 years ago
0
interpreter mismatch
#52
lozybean
closed
4 years ago
2
enable basename.bai index for basename.bam bamfile
#51
lozybean
closed
4 years ago
1
Issues 21, 39, PR 49
#50
rbonneville
closed
4 years ago
0
Removed DOS line endings. Added #! lines.
#49
nanakiksc
closed
5 years ago
1
In README: make RepeatFinder
#48
nanakiksc
closed
4 years ago
0
Issue in runni
#47
YuvaraniThambidurai
closed
5 years ago
1
Issue
#46
YuvaraniThambidurai
closed
5 years ago
1
Issue in
#45
YuvaraniThambidurai
closed
5 years ago
4
Remove the step of correct off-by-one error in MANTIS ?
#44
lidd77
opened
5 years ago
0
How to select MSI loci most predictive of a sample's status ??
#43
lidd77
opened
5 years ago
2
Issue running MANTIS
#42
chloe35430
opened
5 years ago
12
Repeatfinder missing?
#41
danchubb
closed
5 years ago
1
Microsatellite Loci BED File
#40
gpuwarrior
closed
5 years ago
11
MANTIS output fails if path to output contains a dot and output file stem does not
#39
rbonneville
closed
4 years ago
0
MANTIS on Mouse samples
#38
Rashesh7
closed
5 years ago
3
installing MANTIS
#37
gpuwarrior
closed
6 years ago
2
Position-sort loci in MANTIS output files
#36
rbonneville
closed
6 years ago
0
score range
#35
twelvesummer
closed
5 years ago
1
Error: Specified locus does not appear to be the starting point for kmer ...
#34
messersc
opened
6 years ago
0
Support GATK .bai naming
#33
knightjimr
closed
4 years ago
1
Loci in MANTIS output are sorted alphabetically
#32
mdyckmanns
closed
6 years ago
2
Add citation to readme
#31
rbonneville
closed
6 years ago
0
Please put citation info into the README
#30
messersc
closed
6 years ago
0
Output Files - status and *.txt
#29
danablanc
opened
6 years ago
5
Add documentation of output file formats.
#28
rbonneville
closed
6 years ago
0
Add the support of TUMOR-only sample
#27
wangyugui
closed
6 years ago
2
output files
#26
fangylo
closed
6 years ago
1
MANTIS on WGS samples
#25
Rashesh7
closed
6 years ago
5
RAM usage on targeted reads
#24
IvantheDugtrio
closed
6 years ago
5
RepeatFinder: recommended minimum k-mer length
#23
messersc
closed
6 years ago
1
help: Error: Specified locus does not appear to be the starting point for kmer
#22
drmjc
opened
6 years ago
8
Error with k-mer repeat count calculations; terminating program.
#21
jp3117
closed
5 years ago
9
Package MANTIS
#20
messersc
opened
6 years ago
3
fix structures.py tabs and spaces (vi :retab)
#19
messersc
closed
6 years ago
2
`structures.py`: TabError: inconsistent use of tabs and spaces in indentation
#18
messersc
closed
6 years ago
0
Do not prefix chromosome names with "chr" per default
#17
messersc
opened
6 years ago
5
Fix mixed whitespace
#16
lgretton
closed
6 years ago
1
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