OSU-SRLab MANTIS issues

OSU-SRLab / MANTIS

Microsatellite Analysis for Normal-Tumor InStability

GNU General Public License v3.0

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issues

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Do not prepend `chr` to BED

#65 nh13 closed 2 years ago
0
Use the FASTA index to get chromosome ordering

#64 nh13 opened 2 years ago
0
Fix version number in usage

#63 nh13 closed 2 years ago
0
Add bioconda badge

#62 nh13 closed 2 years ago
0
Print out missing modules

#61 nh13 closed 2 years ago
0
Error with k-mer repeat count calculations; terminating program, which seems to be triggered by "_multiprocessing.SemLock Permission Denied"

#60 HuangRuocheng closed 3 years ago
1
typo in module checking

#59 frederic-michaud opened 3 years ago
1
Running Mantis on WGS Sample

#58 ghosholivia opened 4 years ago
0
can't finish the process

#57 RiMaxim opened 4 years ago
8
Is it possible that using MANTIS to analyze RNAseq data?

#56 hqu-arcus closed 4 years ago
2
About MS loci BED file used in MANTIS

#55 Clouate closed 4 years ago
1
Failed to fetch sequence; Error with k-mer repeat count calculations; terminating program.

#54 JessicaRoelands closed 4 years ago
5
fix interpreter mismatch; #ISSUE 52

#53 lozybean closed 5 years ago
0
interpreter mismatch

#52 lozybean closed 5 years ago
2
enable basename.bai index for basename.bam bamfile

#51 lozybean closed 4 years ago
1
Issues 21, 39, PR 49

#50 rbonneville closed 5 years ago
0
Removed DOS line endings. Added #! lines.

#49 nanakiksc closed 5 years ago
1
In README: make RepeatFinder

#48 nanakiksc closed 5 years ago
0
Issue in runni

#47 YuvaraniThambidurai closed 5 years ago
1
Issue

#46 YuvaraniThambidurai closed 5 years ago
1
Issue in

#45 YuvaraniThambidurai closed 5 years ago
4
Remove the step of correct off-by-one error in MANTIS ?

#44 lidd77 opened 5 years ago
0
How to select MSI loci most predictive of a sample's status ??

#43 lidd77 opened 5 years ago
2
Issue running MANTIS

#42 chloe35430 opened 5 years ago
12
Repeatfinder missing?

#41 danchubb closed 5 years ago
1
Microsatellite Loci BED File

#40 gpuwarrior closed 5 years ago
11
MANTIS output fails if path to output contains a dot and output file stem does not

#39 rbonneville closed 5 years ago
0
MANTIS on Mouse samples

#38 Rashesh7 closed 5 years ago
3
installing MANTIS

#37 gpuwarrior closed 6 years ago
2
Position-sort loci in MANTIS output files

#36 rbonneville closed 6 years ago
0
score range

#35 twelvesummer closed 6 years ago
1
Error: Specified locus does not appear to be the starting point for kmer ...

#34 messersc opened 6 years ago
0
Support GATK .bai naming

#33 knightjimr closed 4 years ago
1
Loci in MANTIS output are sorted alphabetically

#32 mdyckmanns closed 6 years ago
2
Add citation to readme

#31 rbonneville closed 6 years ago
0
Please put citation info into the README

#30 messersc closed 6 years ago
0
Output Files - status and *.txt

#29 danablanc opened 6 years ago
5
Add documentation of output file formats.

#28 rbonneville closed 6 years ago
0
Add the support of TUMOR-only sample

#27 wangyugui closed 6 years ago
2
output files

#26 fangylo closed 6 years ago
1
MANTIS on WGS samples

#25 Rashesh7 closed 6 years ago
5
RAM usage on targeted reads

#24 IvantheDugtrio closed 6 years ago
5
RepeatFinder: recommended minimum k-mer length

#23 messersc closed 6 years ago
1
help: Error: Specified locus does not appear to be the starting point for kmer

#22 drmjc opened 6 years ago
8
Error with k-mer repeat count calculations; terminating program.

#21 jp3117 closed 5 years ago
9
Package MANTIS

#20 messersc opened 6 years ago
3
fix structures.py tabs and spaces (vi :retab)

#19 messersc closed 6 years ago
2
`structures.py`: TabError: inconsistent use of tabs and spaces in indentation

#18 messersc closed 6 years ago
0
Do not prefix chromosome names with "chr" per default

#17 messersc opened 6 years ago
5
Fix mixed whitespace

#16 lgretton closed 6 years ago
1