General snakefile clean up (removed some troubleshooting lines)
Fixed the snakefile so data/default_values.csv will trigger an update
Fixed Simplicity submodule so it appears correctly
Removed geo_filter_test_v4.txt and osemosys_global_model.txt from the root directory. Theses were from before snakemake
Added logging to snakemake and OPG scripts as per issue #52 . I originally had progress bars in the OPG scrips, but they are just written to the log files by snakemake. If we write them to the console, they get moved all around because snakemake will execute multiple rules at once... If we do want to add progress bars I can add them back in quickly now
Updated .gitignore to include log files
Added in environments to snakefile. As per our conversation last week, they might not be too useful now. But the functionality is there for the future. Unless we explicitly call the conda environments using the -- use-conda flag, they wont be used.
Added seasons and dayparts to the config file as per issue #76
data/default_values.csvwill trigger an updategeo_filter_test_v4.txtandosemosys_global_model.txtfrom the root directory. Theses were from before snakemake.gitignoreto include log files-- use-condaflag, they wont be used.