Fix missing header in Wheatsheaf output in leccalc and ordleccalc
The logic for determining whether headers are written out has been simplified and moved outside of the aggreports class, which has aided the readability of the code. Additionally, this has fixed the missing header issue in the Wheatsheaf output, which has been witnessed when the lowest summary ID yields no output (i.e. when all the samples are zero loss).
Refactor aggreports class
The aggreports class has been refactored and methods have been simplified in an attempt to optimise the code and make it more readable. The determination of a number of variables have been moved to parent functions, including EPCalc and EPType. The initialisation of the aggreports class has been brought outside any loops, reducing overhead, as has the determination of legacy or ORD output. Other minor changes include passing vectors by reference and replacing a function call with a conditional.
Fix missing header in Wheatsheaf output in leccalc and ordleccalc
The logic for determining whether headers are written out has been simplified and moved outside of the
aggreportsclass, which has aided the readability of the code. Additionally, this has fixed the missing header issue in the Wheatsheaf output, which has been witnessed when the lowest summary ID yields no output (i.e. when all the samples are zero loss).Refactor aggreports class
The
aggreportsclass has been refactored and methods have been simplified in an attempt to optimise the code and make it more readable. The determination of a number of variables have been moved to parent functions, includingEPCalcandEPType. The initialisation of theaggreportsclass has been brought outside any loops, reducing overhead, as has the determination of legacy or ORD output. Other minor changes include passing vectors by reference and replacing a function call with a conditional.