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OceanBioME / OceanBioME.jl

🌊 🦠 🌿 A fast and flexible modelling environment written in Julia for modelling the coupled interactions between ocean biogeochemistry, carbonate chemistry, and physics
https://oceanbiome.github.io/OceanBioME.jl/
MIT License
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Add `NutrientPhytoplanktonZooplanktonDetritus`, `BoxModel`, and `GasExchange` in Docs/Library #115

Closed navidcy closed 1 year ago

navidcy commented 1 year ago

Related to #114; seems I missed these ones there! :)

Also adds an example in the LOBSTER docs.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 50.00% and no project coverage change.

Comparison is base (2815e36) 61.46% compared to head (1997775) 61.46%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #115 +/- ## ======================================= Coverage 61.46% 61.46% ======================================= Files 26 26 Lines 968 968 ======================================= Hits 595 595 Misses 373 373 ``` | [Impacted Files](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME) | Coverage Δ | | |---|---|---| | [src/Boundaries/gasexchange.jl](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME#diff-c3JjL0JvdW5kYXJpZXMvZ2FzZXhjaGFuZ2Uuamw=) | `84.48% <ø> (ø)` | | | [src/BoxModel/boxmodel.jl](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME#diff-c3JjL0JveE1vZGVsL2JveG1vZGVsLmps) | `0.00% <0.00%> (ø)` | | | [src/Light/2band.jl](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME#diff-c3JjL0xpZ2h0LzJiYW5kLmps) | `86.11% <ø> (ø)` | | | [src/Models/AdvectedPopulations/LOBSTER/LOBSTER.jl](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME#diff-c3JjL01vZGVscy9BZHZlY3RlZFBvcHVsYXRpb25zL0xPQlNURVIvTE9CU1RFUi5qbA==) | `81.25% <ø> (ø)` | | | [src/Models/Individuals/SLatissima.jl](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME#diff-c3JjL01vZGVscy9JbmRpdmlkdWFscy9TTGF0aXNzaW1hLmps) | `83.87% <ø> (ø)` | | | [src/Utils/negative\_tracers.jl](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME#diff-c3JjL1V0aWxzL25lZ2F0aXZlX3RyYWNlcnMuamw=) | `18.51% <ø> (ø)` | | | [src/Models/AdvectedPopulations/NPZD.jl](https://app.codecov.io/gh/OceanBioME/OceanBioME.jl/pull/115?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=OceanBioME#diff-c3JjL01vZGVscy9BZHZlY3RlZFBvcHVsYXRpb25zL05QWkQuamw=) | `90.27% <100.00%> (ø)` | |

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