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OceanGenomics
/
mudskipper
A tool for projecting genomic alignments to transcriptomic coordinates
BSD 3-Clause "New" or "Revised" License
31
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7
forks
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Unable to run with spatial bam
#44
chrisquatjr
opened
2 months ago
0
No mapped read in output bam with gff file
#43
steven-bioinfo
opened
4 months ago
0
Error in reading annotation file.
#42
anoronh4
closed
10 months ago
2
print statements
#41
TejasTemker
closed
3 months ago
0
quantification and correlation script
#40
TejasTemker
closed
3 months ago
2
comments
#39
TejasTemker
closed
1 year ago
1
Api comments
#38
TejasTemker
closed
1 year ago
0
comments
#37
TejasTemker
closed
1 year ago
0
test case
#36
TejasTemker
closed
3 months ago
1
assertion failure: last>=first
#35
lkmack21
opened
1 year ago
2
Differences in quantification when using transcriptome BAM from Muskipper or STAR
#34
osvaldoreisss
opened
1 year ago
0
cargo build --release!
#33
Samaneh14
closed
2 years ago
5
Support for overhang alignment
#32
yfei-w
closed
1 year ago
2
Clippy clean
#31
rob-p
closed
2 years ago
0
Better temp file management during shuffle
#30
sjbaker47
closed
2 years ago
0
fix issue #24
#29
gmarcais
closed
2 years ago
5
Fix for test_bam2bam
#28
HosseinAsghari
closed
2 years ago
0
Change libradicl link to a new repo
#27
janoppelt
closed
2 years ago
1
Does this pull request fix issue #24 ?
#26
jelber2
opened
2 years ago
8
test_bam2bam fails
#25
rob-p
closed
2 years ago
2
'main' panicked at 'index out of bounds: the len is 1 but the index is 1'
#24
aleighbrown
opened
2 years ago
22
Compile errors
#23
jdidion
opened
2 years ago
6
Shuffle
#22
sjbaker47
closed
2 years ago
6
Compiling error on MacOS
#21
jianshu93
closed
2 years ago
3
Adding more tags required for salmon bulk analysis
#20
haghshenas
closed
2 years ago
0
Update README.md
#19
rob-p
closed
2 years ago
0
Build a unmapped barcode frequency table
#18
haghshenas
opened
2 years ago
0
Multiple bugfixes
#17
haghshenas
closed
2 years ago
0
Let the user choose the path for the GTF index
#16
haghshenas
closed
2 years ago
0
Recover cell barcode if it contains a single N only
#15
haghshenas
opened
2 years ago
2
BAM record is not updated properly for reverse orientation transcripts
#14
haghshenas
closed
2 years ago
0
Properly set the flag for secondary alignments
#13
haghshenas
opened
2 years ago
4
Disagreement with the annotation when there is a spliced alignment
#12
haghshenas
closed
2 years ago
0
Initial implementation of shuffle command
#11
sjbaker47
closed
2 years ago
4
Support overhanging alignments
#10
haghshenas
opened
2 years ago
0
Off by one error in setting the number of threads
#9
haghshenas
opened
2 years ago
0
Negative coordinate in output BAM
#8
haghshenas
closed
2 years ago
1
Handle unmapped reads more properly
#7
haghshenas
closed
2 years ago
0
Reading from SAM with multiple threads
#6
haghshenas
opened
2 years ago
0
Dropping some alignments against overlapping transcripts
#5
haghshenas
opened
2 years ago
0
Inconsistent CIGAR strings
#4
haghshenas
closed
2 years ago
1
Wrong pairing of alignments
#3
haghshenas
closed
2 years ago
0
Supporting supplementary alignments
#2
haghshenas
closed
2 years ago
1
Output RAD format from mudskipper for bulk (both SE and PE) and single-cell
#1
haghshenas
closed
2 years ago
6