Do you have guidance on installing Singularity on HPC Linux?

[JiahuaQu]

Because the website could not recognize our input data, gene_information.txt design.txt expression.txt we planned to lanch the Shiny in our institute's HPC Linux, but had no idea how to modify your Docker repository content into Sigularity (or Apptainer). Do you have guidance on installing Singularity on HPC Linux? Or Sigularity/Docker image online? Thank you.

[Alexandre-So]

There is currently a problem with "diane.ipsim.inrae.fr".

For the moment, if you want to use DIANE online, you can use this URL : https://shinyapps.southgreen.fr/app/dianelatesttwo

And you can also try the latest "beta" version here : https://shinyapps.southgreen.fr/app/dianebeta

For singularity, you can maybe try to use the dockerfile as it is, as I heard that you can use docker apps with singulatiry. You may find interesting things here : https://docs.sylabs.io/guides/2.6/user-guide/singularity_and_docker.html

Best,

[JiahuaQu]

Thank you for the information. I read and tried following that singularity_and_docker link, but found that sigularity need different files. One way to transfer a docker image into sigularity is to pull the built docker iamge that has been uploaded to Docker hub. You must have already built the docker image in your server or computer. Have you uploaded/shared that docker image in Docker hub? If not yet, can you do that? Then the public can download the image directly without need of building the image again. Thank you.

[Alexandre-So]

I'll take a look at this. I'll keep you updated.

Best,

[JiahuaQu]

Hi, is the image available now? Thank you very much.

[Alexandre-So]

Hi,

Not yet. I'll check this soon.

Best,

[Alexandre-So]

Hi,

Here is the link you needed :

https://hub.docker.com/r/alexandreso/diane

This is the last version from this repository.

Best,