issues
search
OliveiraDS-hub
/
ChimeraTE
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
GNU General Public License v3.0
18
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Example Data Mode 1
#21
albertgarciandres
opened
1 month ago
0
Warning meassage in mode 2: Unable to calculate gene expression!
#20
Lynuxoo
opened
3 months ago
1
Errors in merging coverage from different isoforms with mode2
#19
Lynuxoo
closed
3 months ago
5
Detect only TE initiated transcripts
#18
ngualand
closed
3 months ago
2
Bowtie2 Alignment runs very long
#17
anna3106
closed
3 months ago
4
Error regarding TE and gene gtf files (?) when running mode 1
#16
meoomen
closed
5 months ago
2
Problems with mode2 chimeraTE
#15
Ifengel
closed
3 months ago
4
TE transcripts fasta file needed to Mode 2.
#14
Ifengel
closed
6 months ago
2
Conda Download Error from .yml file
#13
AndrewGarven
closed
6 months ago
2
ValueError arose after Rep1 and 2 analysis
#12
KaiOtsuka
closed
7 months ago
6
samtools index: failed to create index, Numerical result out of range
#11
majie5976
closed
9 months ago
6
Mode_2 trouble
#10
JBerthelier
closed
6 months ago
5
Analysis with unstranded data
#9
Ifengel
closed
9 months ago
1
Error with bedfile
#8
Ifengel
closed
10 months ago
2
How to understand the meaning of exonized_type?
#7
Orz-CQ
closed
10 months ago
3
ChimeraTE Mode 1 with bam files
#6
OliveiraDS-hub
closed
12 months ago
7
chimTE_mode1.py file not found
#5
Lynuxoo
closed
1 year ago
3
how to get this file --ref_TEs species database used by RepeatMasker
#4
xixifa
closed
1 year ago
4
can't find script of mode2 (transcripts_IDs_NCBI.sh)
#3
xixifa
closed
1 year ago
1
Questions while install the ChimeraTE
#2
Orz-CQ
closed
12 months ago
8
Dockerfile
#1
Tiago-Minuzzi
closed
1 year ago
0