Loadings(ds, reduction = "X_pca_harmony") is empty

OliverDietrich / SeuratHelper

Helper functions for the Seurat toolkit for single-cell genomics

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Loadings(ds, reduction = "X_pca_harmony") is empty #1

Open RobStrasser opened 2 years ago

RobStrasser commented 2 years ago

Probably, the PCA loadings matrix did not get transferred to the seurat object. I found something related to to accessing that info from within Scanpy: https://github.com/theislab/scanpy/issues/836