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OmicsDI / specifications

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Use OmicsDI as TODO list for repositories to add Bioschemas #23

Open sneumann opened 5 years ago

sneumann commented 5 years ago

Hi, I would love to see (and help!) to re-do the annotations and mappings done via the OmicsDI data schema with bioschemas.org. This includes 1) Mapping OmicsDI data schema to concepts in (bio)schemas.org 2) Creating missing ones in Bioschemas.org 3) Working with repositories to converge towards bioschemas.org annotations

Another potential idea would be to accept new repos ONLY if they use bioschemas.org in first place. Are there any roadblocks to this plan ? Or "just" a lot of work ? Yours, Steffen

ypriverol commented 5 years ago

Hi @sneumann We implemented schema.org long time ago. See examples:

https://search.google.com/structured-data/testing-tool#url=https%3A%2F%2Fwww.omicsdi.org%2Fdataset%2Farrayexpress-repository%2FE-MTAB-5006

If you see that more changes are needed just let us know.

sneumann commented 5 years ago

Good start ! I was more suggesting to convince the upstream repositories to adopt bioschemas to make your life easier. Now that they see what great things come out of a meta-search like OmicsDI. they might see the value. And I'd like to see more information from OmicsDI reflected in Bioschemas, e.g. the Organism, ... and use the OmicsDI momentum to harmonise across repos. Yours, Steffen P.S.: of course my favourite study is: https://search.google.com/structured-data/testing-tool/u/0/#url=https%3A%2F%2Fwww.omicsdi.org%2Fdataset%2Fmetabolights_dataset%2FMTBLS2

ypriverol commented 5 years ago

I will add an issue about how to push the Organism into BioSchemas.