OmicsML CellPLM issues - Githubissues

OmicsML / CellPLM

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

BSD 2-Clause "Simplified" License

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Question about the latent layer used in pretrain model

#20 lishensuo opened 2 days ago
0
Question about the position encoding of 'pe = 0.' code

#19 lishensuo opened 3 days ago
0
Request for pretraining dataset links

#18 lemousehunter opened 1 month ago
0
how to convert these numbers into the real cell type ?

#17 noob000007 opened 2 months ago
0
Is there a pre-trained cell type annotation model available with weights that can be directly used on the MS dataset?

#16 noob000007 opened 2 months ago
1
Request for Update on Dataset Details described in Table 6

#15 litxiaoyao closed 2 months ago
2
issue regarding metrics

#14 kocemir opened 5 months ago
0
self.head = annotation in cell type annotation task but None in the imputation task

#13 MohammedZidane opened 5 months ago
0
Meet an error when using CellPLM

#12 HelloWorldLTY opened 5 months ago
1
AssertionError: Split field `split` is specified but not found in AnnData.obs when predicting new anndata object.

#11 ngvananh2508 opened 7 months ago
3
Can not use trained model because of assertion mistakes

#10 nva001 opened 7 months ago
1
Training the model from scratch

#9 MohammedZidane opened 8 months ago
8
Bugs of running own codes for imputation

#8 HelloWorldLTY opened 8 months ago
5
Cannot open spatial h5ad files

#7 WhirlFirst closed 8 months ago
2
Was it necessary to have the gene embedder part?

#6 MohammedZidane closed 8 months ago
4
Request for Update on Dataset Details

#5 WhenMelancholy closed 7 months ago
3
Request for Update on Gene Perturbation Prediction Task Workflow

#4 WhenMelancholy opened 9 months ago
1
ensembl conversion

#3 jayypaul opened 10 months ago
10
Public Training and Fine-tuning Pipeline

#2 WhenMelancholy closed 9 months ago
3
More details for reproduction of figure 3

#1 zhan8855 closed 9 months ago
4